Search results for "Ciliates"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
109	Lucian Ilie, Roberto Solis-Oba	Gene Assembly Algorithms for Ciliates.	DNA	2006	DBLP DOI BibTeX RDF	stichotrichs, gene assembly, dlad-first greedy strategy, algorithm, ciliates
81	Grzegorz Rozenberg	Theory Inspired by Gene Assembly in Ciliates.	CIAA	2006	DBLP DOI BibTeX RDF
62	Liliana Cojocaru	Simulating the Process of Gene Assembly in Ciliates.	CIAA	2004	DBLP DOI BibTeX RDF
62	Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg	Characterizing the Micronuclear Gene Patterns in Ciliates.	Theory Comput. Syst.	2002	DBLP DOI BibTeX RDF
62	Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg	Patterns of Micronuclear Genes in ciliates.	DNA	2001	DBLP DOI BibTeX RDF
56	Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg	Parallelism in Gene Assembly.	Nat. Comput.	2006	DBLP DOI BibTeX RDF
53	Tero Harju, Chang Li, Ion Petre	Parallel complexity of signed graphs for gene assembly in ciliates.	Soft Comput.	2008	DBLP DOI BibTeX RDF	Gene assembly, Complexity, Parallelism, Graph model, Ciliates
47	Artiom Alhazov, Ion Petre, Vladimir Rogojin	Solutions to computational problems through gene assembly.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Stichotrichous, Gene assembly, Intramolecular model, Ciliate-based computing, DNA computing, Hamiltonian path problem, Ciliates
47	Michael Domaratzki	Equivalence in template-guided recombination.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Template-guided recombination, DNA recombination, Equivalence, Ciliates
44	Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg	From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates.	FCT	2007	DBLP DOI BibTeX RDF
44	Mark Daley, Ian McQuillan	Useful Templates and Iterated Template-Guided DNA Recombination in Ciliates.	Theory Comput. Syst.	2006	DBLP DOI BibTeX RDF
44	Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus	Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph.	CompLife	2006	DBLP DOI BibTeX RDF
44	Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg	The Breakpoint Graph in Ciliates.	CompLife	2005	DBLP DOI BibTeX RDF
44	Tero Harju, Ion Petre, Grzegorz Rozenberg	Two Models for Gene Assembly in Ciliates.	Theory Is Forever	2004	DBLP DOI BibTeX RDF
44	Tero Harju, Grzegorz Rozenberg	Computational Processes in Living Cells: Gene Assembly in Ciliates.	Developments in Language Theory	2002	DBLP DOI BibTeX RDF
37	Michael Domaratzki	Formal Language Tools for Template-Guided DNA Recombination.	LATA	2008	DBLP DOI BibTeX RDF
37	Artiom Alhazov, Ion Petre, Vladimir Rogojin	Solutions to Computational Problems Through Gene Assembly.	DNA	2007	DBLP DOI BibTeX RDF
37	Jürgen Dassow, György Vaszil	Ciliate Bio-operations on Finite String Multisets.	Developments in Language Theory	2006	DBLP DOI BibTeX RDF
37	Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg	Complexity Measures for Gene Assembly.	KDECB	2006	DBLP DOI BibTeX RDF
37	Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg	Parallelism in Gene Assembly.	DNA	2004	DBLP DOI BibTeX RDF
28	Liliana Cojocaru	Watson-Crick automata and PCFAS with two components: a computational power analogy.	Conf. Computing Frontiers	2004	DBLP DOI BibTeX RDF	Szilard languages, Watson-Crick automata, gene assembly, parallel communicating finite automata systems, parallel communicating finite transducer systems, theory of computation, formal language theory, DNA molecule, ciliates
25	Brandon K. B. Seah, Estienne C. Swart	BleTIES: annotation of natural genome editing in ciliates using long read sequencing.	Bioinform.	2021	DBLP DOI BibTeX RDF
25	Ganbat Ganbaatar, Khuder Altangerel, Tseren-Onolt Ishdorj	Solving NP Hard Problems in the Framework of Gene Assembly in Ciliates.	BIC-TA (1)	2018	DBLP DOI BibTeX RDF
25	Nazifa Azam Khan, Ian McQuillan	Descrambling Order Analysis in Ciliates.	UCNC	2017	DBLP DOI BibTeX RDF
25	Vladimir Rogojin, Ion Petre	The Structure of Elementary Strategies for Gene Assembly in Ciliates.	Fundam. Informaticae	2015	DBLP DOI BibTeX RDF
25	Robert Brijder	Recombination faults in gene assembly in ciliates modeled using multimatroids.	Theor. Comput. Sci.	2015	DBLP DOI BibTeX RDF
25	Meng-Tsung Lee, Jiang-Shiou Hwang, Chih-Yung Hsu, Yang-Chi Chang	Combining a locomotion indicator and data mining to analyze the interactive patterns between copepods and ciliates.	Ecol. Informatics	2015	DBLP DOI BibTeX RDF
25	Md. Sowgat Ibne Mahmud, Ian McQuillan	Simulation of the 2JLP Gene Assembly Process in Ciliates.	UCNC	2015	DBLP DOI BibTeX RDF
25	I. Petra, V. Rogojin	Dependency Relations Between Elementary Intramolecular Operations in Gene Assembly in Ciliates.	J. Autom. Lang. Comb.	2014	DBLP DOI BibTeX RDF
25	Aaron David Goldman, Elizabeth M. Stein, John R. Bracht, Laura F. Landweber	Programmed Genome Processing in Ciliates.	Discrete and Topological Models in Molecular Biology	2014	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	The Algebra of Gene Assembly in Ciliates.	Discrete and Topological Models in Molecular Biology	2014	DBLP DOI BibTeX RDF
25	Sepinoud Azimi, Ion Petre	The Reduction Power of Simple Operations for Gene Assembly in Ciliates.	Discrete Mathematics and Computer Science	2014	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	Graph Polynomials Motivated by Gene Rearrangements in Ciliates.	CiE	2014	DBLP DOI BibTeX RDF
25	Robert Brijder, Mark Daley, Tero Harju, Natasa Jonoska, Ion Petre, Grzegorz Rozenberg	Computational Nature of Gene Assembly in Ciliates.	Handbook of Natural Computing	2012	DBLP DOI BibTeX RDF
25	Jacob Herlin, Anna Nelson, Marion Scheepers	Can ciliates compute evolutionary distance?	CoRR	2012	DBLP BibTeX RDF
25	Kevin B. Clark	Origins of learned reciprocity in solitary ciliates searching grouped 'courting' assurances at quantum efficiencies.	Biosyst.	2010	DBLP DOI BibTeX RDF
25	Sergey Verlan, Artiom Alhazov, Ion Petre	A sequence-based analysis of the pointer distribution of stichotrichous ciliates.	Biosyst.	2010	DBLP DOI BibTeX RDF
25	Kevin B. Clark	Bose-Einstein condensates form in heuristics learned by ciliates deciding to signal 'social' commitments.	Biosyst.	2010	DBLP DOI BibTeX RDF
25	Ion Petre, Grzegorz Rozenberg	Gene assembly in Ciliates.	Scholarpedia	2010	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	Combining overlap and containment for gene assembly in ciliates.	Theor. Comput. Sci.	2010	DBLP DOI BibTeX RDF
25	Miika Langille, Ion Petre, Vladimir Rogojin	Three models for gene assembly in ciliates: a comparison.	Comput. Sci. J. Moldova	2010	DBLP BibTeX RDF
25	Vladimir Rogojin	On computational properties of gene assembly in ciliates.	Comput. Sci. J. Moldova	2010	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg	Reduction Graphs from Overlap Graphs for Gene Assembly in Ciliates.	Int. J. Found. Comput. Sci.	2009	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	Reality-and-Desire in Ciliates.	Algorithmic Bioprocesses	2009	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	The fibers and range of reduction graphs in ciliates.	Acta Informatica	2008	DBLP DOI BibTeX RDF
25	Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg	Patterns of simple gene assembly in ciliates.	Discret. Appl. Math.	2008	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus	Strategies of loop recombination in ciliates.	Discret. Appl. Math.	2008	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	Extending the Overlap Graph for Gene Assembly in Ciliates.	LATA	2008	DBLP DOI BibTeX RDF
25	Miika Langille, Ion Petre, Vladimir Rogojin	Three models for gene assembly in ciliates: a comparison.	BIONETICS	2008	DBLP DOI BibTeX RDF
25	Ion Petre	Mathematics of gene assembly in ciliates (Abstract).	AFL	2008	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	The Fibers and Range of Reduction Graphs in Ciliates	CoRR	2007	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	Extending the Overlap Graph for Gene Assembly in Ciliates	CoRR	2007	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg	How Overlap Determines the Macronuclear Genes in Ciliates	CoRR	2007	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom	Characterizing Reduction Graphs for Gene Assembly in Ciliates.	Developments in Language Theory	2007	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg	Reducibility of gene patterns in ciliates using the breakpoint graph.	Theor. Comput. Sci.	2006	DBLP DOI BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus	Strategies of Loop Recombination in Ciliates	CoRR	2006	DBLP BibTeX RDF
25	Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg	Reducibility of Gene Patterns in Ciliates using the Breakpoint Graph	CoRR	2006	DBLP BibTeX RDF
25	Ion Petre	Invariants of Gene-Assembly in Stichotrichous Ciliates (Invarianten der Gen-Assemblierung in Ciliaten der Unterklasse Stichotrichia).	it Inf. Technol.	2006	DBLP DOI BibTeX RDF
25	Andre R. O. Cavalcanti, Laura F. Landweber	Insights into a Biological Computer: Detangling Scrambled Genes in Ciliates.	Nanotechnology: Science and Computation	2006	DBLP DOI BibTeX RDF
25	Andre R. O. Cavalcanti, Thomas H. Clarke, Laura F. Landweber	MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
25	Andre R. O. Cavalcanti, Laura F. Landweber	Gene Unscrambler for detangling scrambled genes in ciliates.	Bioinform.	2004	DBLP DOI BibTeX RDF
25	Lila Kari, Laura F. Landweber	Biocomputation in Ciliates.	Cellular Computing	2004	DBLP BibTeX RDF
25	Andrzej Ehrenfeucht, Tero Harju, Ion Petre, David M. Prescott, Grzegorz Rozenberg	Formal systems for gene assembly in ciliates.	Theor. Comput. Sci.	2003	DBLP DOI BibTeX RDF
25	Tero Harju, Ion Petre, Grzegorz Rozenberg	Gene Assembly in Ciliates Part I. Molecular Operations.	Bull. EATCS	2003	DBLP BibTeX RDF
25	Andrzej Ehrenfeucht, Ion Petre, David M. Prescott, Grzegorz Rozenberg	String and Graph Reduction Systems for Gene Assembly in Ciliates.	Math. Struct. Comput. Sci.	2002	DBLP DOI BibTeX RDF
25	Rudolf Freund, Carlos Martín-Vide, Victor Mitrana	On Some Operations on Strings Suggested by Gene Assembly in Ciliates.	New Gener. Comput.	2002	DBLP DOI BibTeX RDF
25	David M. Prescott, Grzegorz Rozenberg	How ciliates manipulate their own DNA - A splendid example of natural computing.	Nat. Comput.	2002	DBLP DOI BibTeX RDF
25	David M. Prescott	DNA Manipulations in Ciliates.	Formal and Natural Computing	2002	DBLP DOI BibTeX RDF
25	Tero Harju, Ion Petre, Grzegorz Rozenberg	Tutorial on DNA Computing and Graph Transformation - Computational Nature of Gene Assembly in Ciliates.	ICGT	2002	DBLP DOI BibTeX RDF
25	Andrzej Ehrenfeucht, Ion Petre, David M. Prescott, Grzegorz Rozenberg	Universal and simple operations for gene assembly in ciliates.	Where Mathematics, Computer Science, Linguistics and Biology Meet	2001	DBLP BibTeX RDF
25	Andrzej Ehrenfeucht, Ion Petre, David M. Prescott, Grzegorz Rozenberg	Circularity and Other Invariants of Gene Assembly in Ciliates.	Words, Semigroups, and Transductions	2001	DBLP BibTeX RDF
25	Grzegorz Rozenberg	DNA Processing in Ciliates - the Wonders of DNA Computing in vivo.	UMC	2000	DBLP BibTeX RDF
25	Grzegorz Rozenberg	DNA Processing in Ciliates - A Computational Point of View (invited abstract).	SPIRE	2000	DBLP DOI BibTeX RDF
25	Grzegorz Rozenberg	Gene Assembly in Ciliates: Computing by Folding.	A Half-Century of Automata Theory	2000	DBLP BibTeX RDF
25	Lila Kari, Jarkko Kari, Laura F. Landweber	Reversible Molecular Computation in Ciliates.	Jewels are Forever	1999	DBLP BibTeX RDF
19	Mark Daley	On the Processing Power of Protozoa.	CiE	2008	DBLP DOI BibTeX RDF
19	Robert Brijder, Miika Langille, Ion Petre	A String-Based Model for Simple Gene Assembly.	FCT	2007	DBLP DOI BibTeX RDF
19	Mark Daley, Ian McQuillan	On Computational Properties of Template-Guided DNA Recombination.	DNA	2005	DBLP DOI BibTeX RDF
19	Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg	Simple Operations for Gene Assembly.	DNA	2005	DBLP DOI BibTeX RDF
19	Tero Harju, Ion Petre, Grzegorz Rozenberg	Formal Properties of Gene Assembly: Equivalence Problem for Overlap Graphs.	Aspects of Molecular Computing	2004	DBLP DOI BibTeX RDF
19	Tero Harju, Ion Petre, Grzegorz Rozenberg	Tutorial on DNA Computing and Graph Transformation.	ICGT	2004	DBLP DOI BibTeX RDF
19	Mark Daley, Lila Kari	Some Properties of Ciliate Bio-operations.	Developments in Language Theory	2002	DBLP DOI BibTeX RDF
19	Lila Kari, Mark Daley, Greg Gloor, Rani Siromoney, Laura F. Landweber	How to Compute with DNA.	FSTTCS	1999	DBLP DOI BibTeX RDF