Search results for "Epitope"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
97	Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters	The Immune Epitope Database and Analysis Resource.	PRIB	2006	DBLP DOI BibTeX RDF
86	Simon M. Garrett	A Paratope Is Not an Epitope: Implications for Immune Network Models and Clonal Selection.	ICARIS	2003	DBLP DOI BibTeX RDF	Paratope, epitope, critical evaluation, Clonal Selection (CS), Immune Network Models, Artificial Immune Systems (AIS)
78	Brendan Mumey, Nathaniel Ohler, Thomas Angel, Algirdas J. Jesaitis, Edward A. Dratz	Filtering Epitope Alignments to Improve Protein Surface Prediction.	ISPA Workshops	2006	DBLP DOI BibTeX RDF
78	Dokyun Na, Doheon Lee	Mathematical Modeling of Immune Suppression.	ICARIS	2005	DBLP DOI BibTeX RDF
66	Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai	A Database for Prediction of Unique Peptide Motifs as Linear Epitopes.	ISBRA	2007	DBLP DOI BibTeX RDF	unique peptide motif, linear epitope, antigenicity, protein family, specificity
58	Brendan Mumey, Brian W. Bailey, Edward A. Dratz	Revealing protein structures: a new method for mapping antibody epitopes.	RECOMB	2002	DBLP DOI BibTeX RDF
47	Dennis Maletich Junqueira, Rúbia Marília de Medeiros, Sabrina Esteves de Matos Almeida, Vanessa Rodrigues Paixão-Cortez, Paulo Michel Roehe, Fernando Rosado Spilki	Mapping HIV-1 Subtype C gp120Epitopes Using a Bioinformatic Approach.	BSB	2009	DBLP DOI BibTeX RDF	HIV-1, subtype C, epitope, gp120, bioinformatics, HLA
39	Refat Sharmin, Abul Bashar Mir Md Khademul Islam	A highly conserved WDYPKCDRA epitope in the RNA directed RNA polymerase of human coronaviruses can be used as epitope-based universal vaccine design.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
39	Zeynep Kosaloglu-Yalçin, Inka Zoernig, Niels Halama, Eliana Ruggiero, Benedikt Brors, Dirk Jäger	The epitope landscape of CRC liver metastases analyzed by whole-exome sequencing and in silico epitope prediction.	BCB	2014	DBLP DOI BibTeX RDF
39	Sharat Chandra, Tiratha Raj Singh	Linear B cell epitope prediction for epitope vaccine design against meningococcal disease and their computational validations through physicochemical properties.	Netw. Model. Anal. Health Informatics Bioinform.	2012	DBLP DOI BibTeX RDF
39	Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusseder, Alessandro Sette	Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
39	Chibing Gong, Yan Li, Ming Li, Jun Luo, Hong Cao, Min Long	B-cell Epitope Mapping of Helicobacter pylori Neutrophil-Activating Protein.	FBIT	2007	DBLP DOI BibTeX RDF
39	David Heckerman, Carl Myers Kadie, Jennifer Listgarten	Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction.	RECOMB	2006	DBLP DOI BibTeX RDF
39	Claus Lundegaard, Morten Nielsen 0001, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund	MHC Class I Epitope Binding Prediction Trained on Small Data Sets.	ICARIS	2004	DBLP DOI BibTeX RDF
39	Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail	Epitope Prediction Algorithms for Peptide based Vaccine Design.	CSB	2003	DBLP DOI BibTeX RDF
39	Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic	Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding.	RECOMB	2007	DBLP DOI BibTeX RDF
39	David C. Trudgian, Felicia Charles Johnson, Zheng Rong Yang	Predicting HIV-1 T Cell Epitopes Using Bio-basis Function Neural Networks.	IJCNN	2006	DBLP DOI BibTeX RDF
39	Heather J. Ruskin, John Burns 0001	Network Emergence in Immune System Shape Space.	ICCSA (2)	2005	DBLP DOI BibTeX RDF
27	Bernhard Knapp, Ulrich Omasits, Sophie Frantal, Wolfgang Schreiner	A critical cross-validation of high throughput structural binding prediction methods for pMHC.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	T cell epitope prediction, Threading, Energy minimization, Substitution, Scoring
27	Peng Zhou 0003, Xiang Chen, Zhicai Shang	Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Multi-conformation-based quantitative structure-activity relationship, Side-chain conformational space analysis, Rotamer library, Self-consistent mean field theory, Protein-peptide complex, HLA-A*0201-restricted CTL epitope
27	T. C. Ip, Vincent A. Fischetti, Jeanette P. Schmidt	An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure.	Algorithmica	1999	DBLP DOI BibTeX RDF	Coiled-coil, Epitope, Dynamic programming, Computational biology, Protein structure
20	Étienne Goffinet, Raghvendra Mall, Ankita Singh, Rahul Kaushik, Filippo Castiglione	MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor.	CoRR	2024	DBLP DOI BibTeX RDF
20	Muhammad Shahab, Muhammad Waleed Iqbal, Abbas Ahmad, Fahad M. Alshabrmi, Dong-Qing Wei, Abbas Khan, Guojun Zheng	Immunoinformatics-driven In silico vaccine design for Nipah virus (NPV): Integrating machine learning and computational epitope prediction.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
20	Chhaya Singh, Neeru Adlakha, Kamal Raj Pardasani	Fuzzy Deep Learning Model for Prediction of Conformational Epitope.	SN Comput. Sci.	2023	DBLP DOI BibTeX RDF
20	Ivan Jacobs, Lim Chwee Ming, Jamie Mong, Manolis Maragoudakis, Nishant Malik	In silico antibody-peptide epitope prediction for personalized cancer therapy.	Frontiers Appl. Math. Stat.	2023	DBLP DOI BibTeX RDF
20	Ran Liu, Ye-Fan Hu, Jin Du, Bao-Zhong Zhang, Thomas Yau, Xiaodan Fan, Jian-Dong Huang	Family-Specific Training Improves Linear B Cell Epitope Prediction for Emerging Viruses.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Hamid Motamedi, Marzie Mahdizade Ari, Mohsen Shahlaei, Sajad Moradi, Parisa Farhadikia, Amirhoushang Alvandi, Ramin Abiri	Designing multi-epitope vaccine against important colorectal cancer (CRC) associated pathogens based on immunoinformatics approach.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Babak Beikzadeh	Immunoinformatics design of multi-epitope vaccine using OmpA, OmpD and enterotoxin against non-typhoidal salmonellosis.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Anand K. Keshri, Rimanpreet Kaur, Suraj S. Rawat, Naina Arora, Rajan K. Pandey, Bajarang V. Kumbhar, Amit Mishra, Shweta Tripathi, Amit Prasad	Designing and development of multi-epitope chimeric vaccine against Helicobacter pylori by exploring its entire immunogenic epitopes: an immunoinformatic approach.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Mona Shafaghi, Zohreh Bahadori, Hamid Madanchi, Mohammad Mehdi Ranjbar, Ali Akbar Shabani, Seyed Fazlollah Mousavi	Immunoinformatics-aided design of a new multi-epitope vaccine adjuvanted with domain 4 of pneumolysin against Streptococcus pneumoniae strains.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Bruna Moreira da Silva, David B. Ascher, Douglas E. V. Pires	epitope1D: accurate taxonomy-aware B-cell linear epitope prediction.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Gabriel Cia, Fabrizio Pucci, Marianne Rooman	Critical review of conformational B-cell epitope prediction methods.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Yuepeng Jiang, Miaozhe Huo, Shuai Cheng Li	TEINet: a deep learning framework for prediction of TCR-epitope binding specificity.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Juntao Deng, Xiao Zhou, Pengyan Zhang, Weibin Cheng, Min Liu 0013, Junzhang Tian	IEPAPI: a method for immune epitope prediction by incorporating antigen presentation and immunogenicity.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Jeremie Theddy Darmawan, Jenq-Shiou Leu, Cries Avian, Nanda Rizqia Pradana Ratnasari	MITNet: a fusion transformer and convolutional neural network architecture approach for T-cell epitope prediction.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen 0001, Stephen Schoenberger, Alessandro Sette, Bjoern Peters	The Cancer Epitope Database and Analysis Resource (CEDAR).	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Tianyi Qiu, Lu Zhang, Zikun Chen, Yuan Wang, Tiantian Mao, Caicui Wang, Yewei Cun, Genhui Zheng, Deyu Yan, Mengdi Zhou, Kailin Tang, Zhiwei Cao	SEPPA-mAb: spatial epitope prediction of protein antigens for mAbs.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Abdul Rehman Khan, Marcel J. T. Reinders, Indu Khatri	Determining epitope specificity of T-cell receptors with transformers.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman	The pitfalls of negative data bias for the T-cell epitope specificity challenge.	Nat. Mac. Intell.	2023	DBLP DOI BibTeX RDF
20	Benjamin Alexander Albert, Yunxiao Yang, Xiaoshan M. Shao, Dipika Singh, Kellie N. Smith, Valsamo Anagnostou, Rachel Karchin	Deep neural networks predict class I major histocompatibility complex epitope presentation and transfer learn neoepitope immunogenicity.	Nat. Mac. Intell.	2023	DBLP DOI BibTeX RDF
20	Yicheng Gao, Yuli Gao, Kejing Dong, Siqi Wu, Qi Liu 0019	Reply to: The pitfalls of negative data bias for the T-cell epitope specificity challenge.	Nat. Mac. Intell.	2023	DBLP DOI BibTeX RDF
20	Xiao Yuan	BeeTLe: A Framework for Linear B-Cell Epitope Prediction and Classification.	CoRR	2023	DBLP DOI BibTeX RDF
20	Marco Pegoraro 0002, Clémentine Dominé, Emanuele Rodolà, Petar Velickovic, Andreea Deac	Geometric Epitope and Paratope Prediction.	CoRR	2023	DBLP DOI BibTeX RDF
20	Pengfei Zhang, Seo-Jin Bang, Heewook Lee	Active Learning Framework for Cost-Effective TCR-Epitope Binding Affinity Prediction.	CoRR	2023	DBLP DOI BibTeX RDF
20	Safoura Soleymani, Fatemeh Janati-fard, Mohammad Reza Housaindokht	Designing a bioadjuvant candidate vaccine targeting infectious bursal disease virus (IBDV) using viral VP2 fusion and chicken IL-2 antigenic epitope: A bioinformatics approach.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Rawaa AlChalabi, Aya Al-Rahim, Dania Omer, Ahmed AbdulJabbar Suleiman	Immunoinformatics design of multi-epitope peptide-based vaccine against Haemophilus influenzae strain using cell division protein.	Netw. Model. Anal. Health Informatics Bioinform.	2023	DBLP DOI BibTeX RDF
20	Xiao Yuan	BeeTLe: A Framework for Linear B-Cell Epitope Prediction and Classification.	ECML/PKDD (6)	2023	DBLP DOI BibTeX RDF
20	Pengfei Zhang, Seo-Jin Bang, Heewook Lee	Active Learning Framework for Cost-Effective TCR-Epitope Binding Affinity Prediction.	BIBM	2023	DBLP DOI BibTeX RDF
20	Jodie Ashford, Anikó Ekárt, Felipe Campelo	Estimating the Limits of Organism-Specific Training for Epitope Prediction.	BIBM	2023	DBLP DOI BibTeX RDF
20	Avik Bhattacharya, James O. Wrabl, Samuel J. Landry, Ramgopal R. Mettu	Parallel Computation of Conformational Stability for CD4+ T-cell Epitope Prediction.	BIBM	2023	DBLP DOI BibTeX RDF
20	Zhang Wan, Zhuoyi Lin, Shamima Rashid, Shaun Yue-Hao Ng, Rui Yin 0002, J. Senthilnath 0001, Chee Keong Kwoh 0001	PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction.	BIBM	2023	DBLP DOI BibTeX RDF
20	Ryan Gardner, Joshua Wilkins, Sejal Mistry, Ramkiran Gouripeddi, Julio C. Facelli	Structural Homology of Epitope Binding Mimicry in the Onset of Type 1 Diabetes Mellitus.	BIBM	2023	DBLP DOI BibTeX RDF
20	Salvador Eugenio C. Caoili	Capturing Solvent-System Effects in B-Cell Epitope Prediction with the HAPTIC3/HEPTAD2 User Toolkit (HUT2).	BCB	2023	DBLP DOI BibTeX RDF
20	Jingshu Bi, Yuanjie Zheng, Chongjing Wang, Yanhui Ding	An Attention Based Bidirectional LSTM Method to Predict the Binding of TCR and Epitope.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
20	Samira Sanami, Mahmoud Rafieian-Kopaei, Korosh Ashrafi Dehkordi, Hamidreza Pazoki-Toroudi, Fatemeh Azadegan-Dehkordi, Gholam-Reza Mobini, Morteza Alizadeh, Muhammad Sadeqi Nezhad, Maryam Ghasemi-Dehnoo, Nader Bagheri	In silico design of a multi-epitope vaccine against HPV16/18.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Subhadip Saha, Shubham Vashishtha, Bishwajit Kundu, Monidipa Ghosh	In-silico design of an immunoinformatics based multi-epitope vaccine against Leishmania donovani.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Bruna Moreira da Silva, Yoochan Myung, David B. Ascher, Douglas E. V. Pires	epitope3D: a machine learning method for conformational B-cell epitope prediction.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Zeynep Banu Ozger, Pinar Cihan	A novel ensemble fuzzy classification model in SARS-CoV-2 B-cell epitope identification for development of protein-based vaccine.	Appl. Soft Comput.	2022	DBLP DOI BibTeX RDF
20	Thaís Cristina Vilela Rodrigues, Arun Kumar Jaiswal, Marcela Rezende Lemes, Marcos Vinícius da Silva, Helioswilton Sales-Campos, Luiz Carlos Júnior Alcântara, Sthephane Fraga de Oliveira Tosta, Rodrigo Bentes Kato, Khalid J. Alzahrani, Debmalya Barh, Vasco Ariston de Carvalho Azevedo, Sandeep Tiwari, Siomar de Castro Soares	An immunoinformatics-based designed multi-epitope candidate vaccine (mpme-VAC/STV-1) against Mycoplasma pneumoniae.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
20	Muhammad Suleman, Uzair Asad, Shafia Arshad, Ayaz ur Rahman, Fazal Akbar, Haji Khan, Zahid Hussain, Syed Shujait Ali, Anwar Mohammad, Abbas Khan, Liaqat Ali, Dong-Qing Wei	Screening of immune epitope in the proteome of the Dabie bandavirus, SFTS, to design a protein-specific and proteome-wide vaccine for immune response instigation using an immunoinformatics approaches.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
20	Yiqi Wang, Haomiao Tang, Chuang Gao, Meixin Ge, Ziteng Li, Zhiqiang Dong, Liang Zhao	Flexibility-aware graph model for accurate epitope identification.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
20	Fatima Noor, Sajjad Ahmad, Maryam Saleem, Huda Alshaya, Muhammad Qasim, Abdur Rehman, Hamsa Ehsan, Nimra Talib, Hamza Saleem, Yousef A. Bin Jardan, Sidra Aslam	Designing a multi-epitope vaccine against Chlamydia pneumoniae by integrating the core proteomics, subtractive proteomics and reverse vaccinology-based immunoinformatics approaches.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
20	Anthony F. La Marca, Robson da S. Lopes, Anna Diva P. Lotufo, Daniella C. Bartholomeu, Carlos R. Minussi	BepFAMN: A Method for Linear B-Cell Epitope Predictions Based on Fuzzy-ARTMAP Artificial Neural Network.	Sensors	2022	DBLP DOI BibTeX RDF
20	Marion F. S. Fischer, James E. Crowe Jr., Jens Meiler	Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
20	Amit Joshi, Nillohit Mitra Ray, Joginder Singh, Atul Kumar Upadhyay, Vikas Kaushik	T-cell epitope-based vaccine designing against Orthohantavirus: a causative agent of deadly cardio-pulmonary disease.	Netw. Model. Anal. Health Informatics Bioinform.	2022	DBLP DOI BibTeX RDF
20	Youjin Kim, Jinhee Park, Junseok Kwon	B-Cell Linear Epitope Prediction Using Transformer Encoder.	ICTC	2022	DBLP DOI BibTeX RDF
20	Yan Liu, Zheng Liu	Identification of linear epitope with Multiple Sequence Representation Learning Network.	BIBM	2022	DBLP DOI BibTeX RDF
20	Rawshon Raha, Yulian Ding, Qiang Liu, Fang-Xiang Wu	Unseen Epitope-TCR Interaction Prediction based on Amino Acid Physicochemical Properties.	BIBM	2022	DBLP DOI BibTeX RDF
20	Avik Bhattacharya, Molly C. Lyons, Samuel J. Landry, Ramgopal R. Mettu	Incorporating antigen processing into CD4+ T cell epitope prediction with integer linear programming.	BCB	2022	DBLP DOI BibTeX RDF
20	Salvador Eugenio C. Caoili	B-cell epitope prediction for antipeptide paratopes with the HAPTIC2/HEPTAD user toolkit (HUT).	BCB	2022	DBLP DOI BibTeX RDF
20	Akash Bahai	Computational methods for characterizing viral neutralization data and predicting linear B-cell epitopes (Computergestützte Methoden zur Charakterisierung viraler Neutralisierungsdaten und Vorhersage linearer B-Zell-Epitope) (PDF / PS)		2022	DOI RDF
20	Toshiaki Noumi, Seiichi Inoue, Haruka Fujita, Kugatsu Sadamitsu, Makoto Sakaguchi, Akiko Tenma, Hironori Nakagami	Epitope Prediction of Antigen Protein Using Attention-based LSTM Network.	J. Inf. Process.	2021	DBLP DOI BibTeX RDF
20	Atefeh Ghasemnejad, Samira Bazmara, Mahsa Shadmani, Kamran Pooshang Bagheri	Designing a New Multi-Epitope Pertussis Vaccine with Highly Population Coverage Based on a Novel Sequence and Structural Filtration Algorithm.	IEEE ACM Trans. Comput. Biol. Bioinform.	2021	DBLP DOI BibTeX RDF
20	Matin Fathollahi, Anwar Fathollahi, Hamid Motamedi, Jale Moradi, Amirhooshang Alvandi, Ramin Abiri	In silico vaccine design and epitope mapping of New Delhi metallo-beta-lactamase (NDM): an immunoinformatics approach.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
20	Avisa Maleki, Giulia Russo, Giuseppe Alessandro Parasiliti Palumbo, Francesco Pappalardo 0001	In silico design of recombinant multi-epitope vaccine against influenza A virus.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
20	Xiaoyun Yang, Liyuan Zhao, Fang Wei, Jing Li 0107	DeepNetBim: deep learning model for predicting HLA-epitope interactions based on network analysis by harnessing binding and immunogenicity information.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
20	Sangeeta Khare, Marli Azevedo, Pravin Parajuli, Kuppan Gokulan	Conformational Changes of the Receptor Binding Domain of SARS-CoV-2 Spike Protein and Prediction of a B-Cell Antigenic Epitope Using Structural Data.	Frontiers Artif. Intell.	2021	DBLP DOI BibTeX RDF
20	Alice Triveri, Stefano A. Serapian, Filippo Marchetti, Filippo Doria, Silvia Pavoni, Fabrizio Cinquini, Elisabetta Moroni, Andrea Rasola, Francesco Frigerio, Giorgio Colombo 0001	SARS-CoV-2 Spike Protein Mutations and Escape from Antibodies: A Computational Model of Epitope Loss in Variants of Concern.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
20	Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman	Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
20	Aftab Alam, Arbaaz Khan, Nikhat Imam, Mohd Faizan Siddiqui, Mohd Waseem, Md. Zubbair Malik, Romana Ishrat	Design of an epitope-based peptide vaccine against the SARS-CoV-2: a vaccine-informatics approach.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
20	Akash Bahai, Ehsaneddin Asgari, Mohammad R. K. Mofrad, Andreas Kloetgen, Alice C. McHardy	EpitopeVec: linear epitope prediction using deep protein sequence embeddings.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Maria Suprun, Randall J. Ellis, Hugh A. Sampson, Mayte Suárez-Fariñas	bbeaR: an R package and framework for epitope-specific antibody profiling.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz	EpiDope: a deep neural network for linear B-cell epitope prediction.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz	EpiDope: a deep neural network for linear B-cell epitope prediction.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Jodie Ashford, João Reis-Cunha, Igor Lobo, Francisco Pereira Lobo, Felipe Campelo	Organism-specific training improves performance of linear B-cell epitope prediction.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Bhargab Ghoshal, Biraja Ghoshal, Stephen Swift, Allan Tucker	Uncertainty Estimation in SARS-CoV-2 B-cell Epitope Prediction for Vaccine Development.	CoRR	2021	DBLP BibTeX RDF
20	Alice Del Vecchio, Andreea Deac, Pietro Liò, Petar Velickovic	Neural message passing for joint paratope-epitope prediction.	CoRR	2021	DBLP BibTeX RDF
20	Abdullah Al Saba, Maisha Adiba, Piyal Saha, Md. Ismail Hosen, Sajib Chakraborty, Ahm H. M. Nurun Nabi	An in-depth in silico and immunoinformatics approach for designing a potential multi-epitope construct for the effective development of vaccine to combat against SARS-CoV-2 encompassing variants of concern and interest.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Abbas Khan, Shahzeb Khan, Shoaib Saleem, N. Nizam-Uddin, Anwar Mohammad, Taimoor Khan, Sajjad Ahmad, Muhammad Arshad 0013, Syed Shujait Ali, Muhammad Suleman, Dong-Qing Wei	Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Muhammad Tahir Ul Qamar, Sajjad Ahmad, Israr Fatima, Faisal Ahmad, Farah Shahid, Anam Naz, Sumra Wajid Abbasi, Abbas Khan, Muhammad Usman Mirza, Usman Ali Ashfaq, Ling-Ling Chen	Designing multi-epitope vaccine against Staphylococcus aureus by employing subtractive proteomics, reverse vaccinology and immuno-informatics approaches.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Samira Sanami, Morteza Alizadeh, Masoud Nosrati, Korosh Ashrafi Dehkordi, Fatemeh Azadegan-Dehkordi, Shahram Tahmasebian, Hamed Nosrati, Mohammad-Hassan Arjmand, Maryam Ghasemi-Dehnoo, Ali Rafiei, Nader Bagheri	Exploring SARS-COV-2 structural proteins to design a multi-epitope vaccine using immunoinformatics approach: An in silico study.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Mateusz Sikora, Sören von Bülow, Florian E. C. Blanc, Michael Gecht, Roberto Covino, Gerhard Hummer	Computational epitope map of SARS-CoV-2 spike protein.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Sarah A. Robinson, Matthew I. J. Raybould, Constantin Schneider, Wing Ki Wong, Claire Marks, Charlotte M. Deane	Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Matthias Niemann, Nils Lachmann, Kirsten Geneugelijk, Eric Spierings	Computational Eurotransplant kidney allocation simulations demonstrate the feasibility and benefit of T-cell epitope matching.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Daniel R. Ripoll, Sidhartha Chaudhury, Anders Wallqvist	Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Fariya Khan, Ajay Kumar	An integrative docking and simulation-based approach towards the development of epitope-based vaccine against enterotoxigenic Escherichia coli.	Netw. Model. Anal. Health Informatics Bioinform.	2021	DBLP DOI BibTeX RDF
20	Amirreza Javadi Mamaghani, Zahra Arab-Mazar, Siamak Heidarzadeh, Mohammad Mehdi Ranjbar, Shima Molazadeh, Sama Rashidi, Farzad Niazpour, Mohadeseh Naghi Vishteh, Homayoon Bashiri, Arezoo Bozorgomid, Hamed Behniafar, Mohammad Ashrafi	In-silico design of a multi-epitope for developing sero-diagnosis detection of SARS-CoV-2 using spike glycoprotein and nucleocapsid antigens.	Netw. Model. Anal. Health Informatics Bioinform.	2021	DBLP DOI BibTeX RDF
20	Amit Joshi, Dinesh Chandra Pathak, M. Amin-ul Mannan, Vikas Kaushik	In-silico designing of epitope-based vaccine against the seven banded grouper nervous necrosis virus affecting fish species.	Netw. Model. Anal. Health Informatics Bioinform.	2021	DBLP DOI BibTeX RDF
20	Aviral Chharia, Apurva Narayan	A novel fuzzy approach towards in silico B-cell epitope identification inducing antigen-specific immune response for Vaccine Design.	BIBE	2021	DBLP DOI BibTeX RDF
20	Xiao Yuan, Daniel Bibl, Kahlil Khan, Lei Sun	Predicting Multi-Epitope Vaccine Candidates Using Natural Language Processing and Deep Learning.	BIBE	2021	DBLP DOI BibTeX RDF