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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 9 occurrences of 7 keywords
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Results
Found 68 publication records. Showing 68 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
163 | Bekir Ergüner, Özgün Erdogan, Osman Ugur Sezerman |
Prediction and Classification for GPCR Sequences Based on Ligand Specific Features. |
ISCIS |
2006 |
DBLP DOI BibTeX RDF |
G-Protein Coupled Receptors (GPCRs), ligand specificity, GPCR sequence |
156 | Ravi Gupta, Ankush Mittal, Kuldip Singh |
A Novel and Efficient Technique for Identification and Classification of GPCRs. |
IEEE Trans. Inf. Technol. Biomed. |
2008 |
DBLP DOI BibTeX RDF |
|
131 | Jingyi Yang, Jitender S. Deogun |
G Protein-Coupled Receptor Classification at the Subfamily Level with Probabilistic Suffix Tree. |
CIBCB |
2006 |
DBLP DOI BibTeX RDF |
|
109 | Jingyi Yang, Jitender S. Deogun |
Classifying G Protein-Coupled Receptors with Multiple Physicochemical Properties. |
BMEI (1) |
2008 |
DBLP DOI BibTeX RDF |
physicochemical properties, SVM, protein classification, G Protein-Coupled Receptors |
109 | Burcu Bakir, Osman Ugur Sezerman |
Functional Classification of G-Protein Coupled Receptors, Based on Their Specific Ligand Coupling Patterns. |
EvoWorkshops |
2006 |
DBLP DOI BibTeX RDF |
|
87 | Quan Gu, Yongsheng Ding |
Binary particle swarm optimization based prediction of G-protein-coupled receptor families with feature selection. |
GEC Summit |
2009 |
DBLP DOI BibTeX RDF |
feature selection, ensemble classifier, binary particle swarm optimization, G-protein-coupled receptors |
65 | Majid Beigi, Andreas Zell |
A Novel Method for Classifying Subfamilies and Sub-subfamilies of G-Protein Coupled Receptors. |
ISBMDA |
2006 |
DBLP DOI BibTeX RDF |
|
54 | Pratibha Mehta Luthra, Sandeep Kumar Barodia, Amresh Prakash, Ramraghubir |
cDNA-Derived Amino Acid Sequence from Rat Brain A2aR Possesses Conserved Motifs PMNYM of TM 5 Domain, Which May Be Involved in Dimerization of A2aR. |
PRIB |
2007 |
DBLP DOI BibTeX RDF |
Adenosine A2a receptor, cDNA, GPCRs, RT-PCR, TM 5 |
51 | Maozi Chen, Yankang Jing, Lirong Wang, Zhiwei Feng, Xiang-Qun Xie |
DAKB-GPCRs: An Integrated Computational Platform for Drug Abuse Related GPCRs. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Jiaqi Hu, Xianqiang Sun, Zhengzhong Kang, Jianxin Cheng |
Computational investigation of functional water molecules in GPCRs bound to G protein or arrestin. |
J. Comput. Aided Mol. Des. |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Haruki Yamane, Takashi Ishida 0002 |
Helix encoder: a compound-protein interaction prediction model specifically designed for class A GPCRs. |
Frontiers Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Rui P. Ribeiro, Alejandro Giorgetti |
pyGOMoDo: GPCRs modeling and docking with python. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Shiqi Li, Xin Chen, Jianfang Chen, Binjian Wu, Jing Liu, Yanzhi Guo, Menglong Li, Xuemei Pu |
Multi-omics integration analysis of GPCRs in pan-cancer to uncover inter-omics relationships and potential driver genes. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Alessandro Nicoli, Andreas Dunkel, Toni Giorgino, Chris de Graaf, Antonella Di Pizio |
Classification Model for the Second Extracellular Loop of Class A GPCRs. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
26 | Jiansheng Wu, Chuangchuang Lan, Zheming Mei, Xiaohuyan Chen, Yanxiang Zhu, Haifeng Hu 0004, Yemin Diao |
Transfer learning with molecular graph convolutional networks for accurate modeling and representation of bioactivities of ligands targeting GPCRs without sufficient data. |
Comput. Biol. Chem. |
2022 |
DBLP DOI BibTeX RDF |
|
26 | Aleksandra E. Badaczewska-Dawid, Sebastian Kmiecik, Michal Kolinski |
Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Kwabena Owusu Dankwah, Jonathon E. Mohl, Khodeza Begum, Ming-Ying Leung |
Understanding the binding of the same ligand to GPCRs of different families. |
BIBM |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Gurdeep Singh |
A machine learning-guided framework to unravel determinants of G-protein selectivity in GPCRs (PDF / PS) |
|
2021 |
RDF |
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26 | Lindsey Burggraaff, Amber van Veen, Chi Chung Lam, Herman W. T. van Vlijmen, Adriaan P. IJzerman, Gerard J. P. van Westen |
Annotation of Allosteric Compounds to Enhance Bioactivity Modeling for Class A GPCRs. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
26 | Xiaoqing Ru, Lida Wang, Lihong Li 0005, Hui Ding, Xiucai Ye, Quan Zou 0001 |
Exploration of the correlation between GPCRs and drugs based on a learning to rank algorithm. |
Comput. Biol. Medicine |
2020 |
DBLP DOI BibTeX RDF |
|
26 | Brian Joseph Bender, Brennica Marlow, Jens Meiler |
Improving homology modeling from low-sequence identity templates in Rosetta: A case study in GPCRs. |
PLoS Comput. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
26 | Passainte Ibrahim, David Wifling, Timothy Clark |
Universal Activation Index for Class A GPCRs. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Damian Lesniak, Sabina Podlewska, Stanislaw Jastrzebski, Igor Sieradzki, Andrzej J. Bojarski, Jacek Tabor |
Development of New Methods Needs Proper Evaluation - Benchmarking Sets for Machine Learning Experiments for Class A GPCRs. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Huajing Ling, Hongjie Wu, Jiayan Han, Jiwen Ding, Weizhong Lu, Qiming Fu 0001 |
Knowledge Based Helix Angle and Residue Distance Restraint Free Energy Terms of GPCRs. |
ICIC (2) |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Kasper Harpsøe, Michael W. Boesgaard, Christian Munk, Hans Bräuner-Osborne, David E. Gloriam |
Structural insight to mutation effects uncover a common allosteric site in class C GPCRs. |
Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
26 | Luca Ponzoni, Giulia Rossetti, Luca Maggi, Alejandro Giorgetti, Paolo Carloni, Cristian Micheletti |
Unifying view of mechanical and functional hotspots across class A GPCRs. |
PLoS Comput. Biol. |
2017 |
DBLP DOI BibTeX RDF |
|
26 | Emmanuel Bresso, Roberto C. Togawa, Kim E. Hammond-Kosack, Martin Urban, Bernard Maigret, Natália Florencio Martins |
GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. |
BMC Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
|
26 | Eelke B. Lenselink, Willem Jespers, Herman W. T. van Vlijmen, Adriaan P. IJzerman, Gerard J. P. van Westen |
Interacting with GPCRs: Using Interaction Fingerprints for Virtual Screening. |
J. Chem. Inf. Model. |
2016 |
DBLP DOI BibTeX RDF |
|
26 | Vaclav Cvicek, William A. Goddard III, Ravinder Abrol |
Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications. |
PLoS Comput. Biol. |
2016 |
DBLP DOI BibTeX RDF |
|
26 | A. J. Venkatakrishnan, Xavier Deupí, Guillaume Lebon, Franziska M. Heydenreich, Tilman Flock, Tamara Miljus, Santhanam Balaji, Michel Bouvier, Dmitry B. Veprintsev, Christopher G. Tate, Gebhard F. X. Schertler, M. Madan Babu |
Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region. |
Nat. |
2016 |
DBLP DOI BibTeX RDF |
|
26 | Muhammad Javed Iqbal, Ibrahima Faye, Samir Brahim Belhaouari |
Classification of GPCRs proteins using a statistical encoding method. |
IJCNN |
2016 |
DBLP DOI BibTeX RDF |
|
26 | James A. R. Dalton, Isaias Lans, Jesús Giraldo |
Quantifying conformational changes in GPCRs: glimpse of a common functional mechanism. |
BMC Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Tannu Kumari, Kamal Raj Pardasani |
Mining amino acid association patterns in class B GPCRs. |
Int. J. Bioinform. Res. Appl. |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Tilman Flock, Charles N. J. Ravarani, Dawei Sun 0002, A. J. Venkatakrishnan, Melis Kayikci, Christopher G. Tate, Dmitry B. Veprintsev, M. Madan Babu |
Universal allosteric mechanism for Gα activation by GPCRs. |
Nat. |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Jie Xia, Hongwei Jin, Zhenming Liu, Liang Ren Zhang, Xiang Simon Wang |
An Unbiased Method To Build Benchmarking Sets for Ligand-Based Virtual Screening and its Application To GPCRs. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
26 | Zhiwei Feng, Mohammed Hamed Alqarni, Peng Yang, Qin Tong, Ananda Chowdhury, Lirong Wang, Xiang-Qun Xie |
Modeling, Molecular Dynamics Simulation, and Mutation Validation for Structure of Cannabinoid Receptor 2 Based on Known Crystal Structures of GPCRs. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
26 | Miwa Sato, Takatsugu Hirokawa |
Extended Template-Based Modeling and Evaluation Method Using Consensus of Binding Mode of GPCRs for Virtual Screening. |
J. Chem. Inf. Model. |
2014 |
DBLP DOI BibTeX RDF |
|
26 | Caroline König, René Alquézar, Alfredo Vellido, Jesús Giraldo |
Reducing the n-gram feature space of class C GPCRs to subtype-discriminating patterns. |
J. Integr. Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
26 | Yan Yan, Xinwei Shao, Zhenran Jiang |
Predicting Potential Ligands for Orphan GPCRs Based on the Improved Laplacian Regularized Least Squares Method. |
ICIC (3) |
2014 |
DBLP DOI BibTeX RDF |
|
26 | Martha Ivón Cárdenas, Alfredo Vellido, Caroline König, René Alquézar, Jesús Giraldo |
Exploratory Visualization of Misclassified GPCRs from their transformed unaligned sequences using manifold learning techniques. |
IWBBIO |
2014 |
DBLP BibTeX RDF |
|
26 | Ákos Tarcsay, Gábor Paragi, Márton Vass, Balázs Jójárt, Ferenc Bogár, György M. Keserü |
The Impact of Molecular Dynamics Sampling on the Performance of Virtual Screening against GPCRs. |
J. Chem. Inf. Model. |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Alexios Koutsoukas, Rubben Torella, George Drakakis, Andreas Bender 0002, Robert C. Glen |
Relating GPCRs pharmacological space based on ligands chemical similarities. |
J. Cheminformatics |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Caroline König, Raúl Cruz-Barbosa, René Alquézar, Alfredo Vellido |
SVM-Based Classification of Class C GPCRs from Alignment-Free Physicochemical Transformations of Their Sequences. |
ICIAP Workshops |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Jerez A. Te, Maoqing Dong, Laurence J. Miller, Andrew J. Bordner |
Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists. |
J. Comput. Aided Mol. Des. |
2012 |
DBLP DOI BibTeX RDF |
|
26 | Christian Tyrchan, Sorel Muresan |
How often do follow-on activities occur - trends seen in a patent database for GPCRs. |
J. Cheminformatics |
2012 |
DBLP DOI BibTeX RDF |
|
26 | Ahmet Sinan Yavuz, Bugra Ozer, Osman Ugur Sezerman |
Pattern Recognition for Subfamily Level Classification of GPCRs Using Motif Distillation and Distinguishing Power Evaluation. |
PRIB |
2012 |
DBLP DOI BibTeX RDF |
|
26 | Murat Can Cobanoglu, Yücel Saygin, Osman Ugur Sezerman |
Classification of GPCRs Using Family Specific Motifs. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp |
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp |
Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs. |
J. Chem. Inf. Model. |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Supriyo Bhattacharya, Govindan Subramanian, Spencer Hall, Jianping Lin, Abdelazize Laoui, Nagarajan Vaidehi |
Allosteric antagonist binding sites in class B GPCRs: corticotropin receptor 1. |
J. Comput. Aided Mol. Des. |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Eelke van der Horst, Julio E. Peironcely, Adriaan P. IJzerman, Margot W. Beukers, Jonathan Robert Lane, Herman W. T. van Vlijmen, Michael T. M. Emmerich, Yasushi Okuno, Andreas Bender 0002 |
A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: a potential strategy for receptor de-orphanization. |
BMC Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider 0002, Stavros J. Hamodrakas |
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. |
Database J. Biol. Databases Curation |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Sonal Shrivastava, K. R. Pardasani, M. M. Malik |
SVM Model for Identification of human GPCRs |
CoRR |
2010 |
DBLP BibTeX RDF |
|
26 | Anwar Rayan, Mohamed Hegaze, Jamal Raiyn |
How Much Bovine Rhodopsin Crystal Structure is Useful for Modeling Human GPCRs? - ß2-Adrenergic Receptor as a Test Case. |
BIOSIGNALS |
2009 |
DBLP BibTeX RDF |
|
26 | Laurent Jacob, Brice Hoffmann, Véronique Stoven, Jean-Philippe Vert |
Virtual screening of GPCRs: An in silico chemogenomics approach. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas |
gpDB: a database of GPCRs, G-proteins, effectors and their interactions. |
Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
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26 | Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein |
Modeling activated states of GPCRs: the rhodopsin template. |
J. Comput. Aided Mol. Des. |
2007 |
DBLP DOI BibTeX RDF |
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26 | Francesca Fanelli, Pier Giuseppe De Benedetti |
Inactive and active states and supramolecular organization of GPCRs: insights from computational modeling. |
J. Comput. Aided Mol. Des. |
2006 |
DBLP DOI BibTeX RDF |
|
26 | Masha Y. Niv, Lucy Skrabanek, Marta Filizola, Harel Weinstein |
Modeling activated states of GPCRs: the rhodopsin template. |
J. Comput. Aided Mol. Des. |
2006 |
DBLP DOI BibTeX RDF |
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26 | Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas |
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models. |
BMC Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
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26 | Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas |
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks. |
Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
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26 | Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas |
A database for G proteins and their interaction with GPCRs. |
BMC Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
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26 | Yasuhito Inoue, Masami Ikeda, Toshio Shimizu |
Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern. |
Comput. Biol. Chem. |
2004 |
DBLP DOI BibTeX RDF |
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26 | Ron Shigeta, Melissa S. Cline, Guoying Liu, Michael A. Siani-Rose |
GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs. |
Bioinform. |
2003 |
DBLP DOI BibTeX RDF |
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22 | Kimberly A. Reynolds, Vsevolod Katritch, Ruben Abagyan |
Identifying conformational changes of the beta2 adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators. |
J. Comput. Aided Mol. Des. |
2009 |
DBLP DOI BibTeX RDF |
?2 Adrenoceptor, Agonist, Virtual ligand screening, GPCR, MMFF, Homology model, G-protein coupled receptor |
22 | Xing-Ming Zhao, De-Shuang Huang, Shiwu Zhang, Yiu-ming Cheung |
Classifying G-Protein Coupled Receptors with Hydropathy Blocks and Support Vector Machines. |
ICIC (3) |
2006 |
DBLP DOI BibTeX RDF |
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22 | Ying Huang, Yanda Li |
Classifying G-protein Coupled Receptors with Support Vector Machine. |
ISNN (2) |
2004 |
DBLP DOI BibTeX RDF |
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22 | Elena V. Samsonova, Thomas Bäck, Margot W. Beukers, Adriaan P. IJzerman, Joost N. Kok |
Combining and Comparing Cluster Methods in a Receptor Database. |
IDA |
2003 |
DBLP DOI BibTeX RDF |
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