Search results for "Neighbor-joining"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
125	Radu Mihaescu, Dan Levy, Lior Pachter	Why Neighbor-Joining Works.	Algorithmica	2009	DBLP DOI BibTeX RDF	Distance methods, Edge radius, Quartets, Neighbor-joining
125	Leonid Zaslavsky, Tatiana A. Tatusova	Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure.	ISBRA	2008	DBLP DOI BibTeX RDF	neighbor-joining algorithm, bucket data structure, adaptive, cache-efficient
112	Travis J. Wheeler	Large-Scale Neighbor-Joining with NINJA.	WABI	2009	DBLP DOI BibTeX RDF	Phylogeny inference, external memory, Neighbor joining
73	Kevin Atteson	The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction.	Algorithmica	1999	DBLP DOI BibTeX RDF	Evolutionary trees, Phylogenetic reconstruction, Neighbor-joining
69	Bin Ma 0002, Lei Xin, Kaizhong Zhang	A new quartet approach for reconstructing phylogenetic trees: quartet joining method.	J. Comb. Optim.	2008	DBLP DOI BibTeX RDF	Quartet based method, Phylogenetic reconstruction, Neighbor joining
61	David Bryant, Vincent Moulton	NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks.	WABI	2002	DBLP DOI BibTeX RDF	SplitsTree, Networks, Hybridization, Phylogenetics, Neighbor-Joining
51	Kord Eickmeyer, Ruriko Yoshida	The Geometry of the Neighbor-Joining Algorithm for Small Trees.	AB	2008	DBLP DOI BibTeX RDF
51	Isaac Elias, Jens Lagergren	Fast Neighbor Joining.	ICALP	2005	DBLP DOI BibTeX RDF
51	Philip T. L. C. Clausen	Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining.	Bioinform.	2023	DBLP DOI BibTeX RDF
43	Maozu Guo 0001, Jian-Fu Li, Yang Liu 0006	Improving the Efficiency of p-ECR Moves in Evolutionary Tree Search Methods Based on Maximum Likelihood by Neighbor Joining.	IMSCCS	2007	DBLP DOI BibTeX RDF
39	Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun 0001, Tandy J. Warnow	The Performance of Phylogenetic Methods on Trees of Bounded Diameter.	WABI	2001	DBLP DOI BibTeX RDF
38	Yongchao Liu, Bertil Schmidt, Douglas L. Maskell	Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA.	IPDPS	2009	DBLP DOI BibTeX RDF
38	David Bryant	On the Uniqueness of the Selection Criterion in Neighbor-Joining.	J. Classif.	2005	DBLP DOI BibTeX RDF
26	Dehua H. Hang, Charles Ofria, Thomas M. Schmidt, Eric Torng	The Effect of Natural Selection on Phylogeny Reconstruction Algorithms.	GECCO	2003	DBLP DOI BibTeX RDF
26	Gerth Stølting Brodal, Rolf Fagerberg, Anna Östlin, Christian N. S. Pedersen, S. Srinivasa Rao 0001	Computing Refined Buneman Trees in Cubic Time.	WABI	2003	DBLP DOI BibTeX RDF
25	A. Chastel Lima, Eloi Araujo, Marco Aurelio Stefanes, Luiz C. S. Rozante	Fast Flexible Neighbor-Joining Using Multicomputing.	BIBE	2023	DBLP DOI BibTeX RDF
25	A. Chastel Lima, Eloi Araujo, Marco Aurelio Stefanes, Luiz C. S. Rozante	A Flexible Variant of the Neighbor-Joining for Building Phylogenetic Trees.	CSCI	2022	DBLP DOI BibTeX RDF
25	Ariel Jaffe, Noah Amsel, Yariv Aizenbud, Boaz Nadler, Joseph T. Chang, Yuval Kluger	Spectral Neighbor Joining for Reconstruction of Latent Tree Models.	SIAM J. Math. Data Sci.	2021	DBLP DOI BibTeX RDF
25	Ariel Jaffe, Noah Amsel, Boaz Nadler, Joseph T. Chang, Yuval Kluger	Spectral neighbor joining for reconstruction of latent tree models.	CoRR	2020	DBLP BibTeX RDF
25	Ruth Davidson, Abraham Martín del Campo	Combinatorial and computational investigations of Neighbor-Joining bias.	CoRR	2020	DBLP BibTeX RDF
25	Guilherme P. Telles, Graziela S. Araújo, Maria Emília Telles Walter, Marcelo M. Brigido, Nalvo F. Almeida	Live neighbor-joining.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
25	Roberto Rodriguez Urquiaga, Reynaldo Alfonte Zapana, Ana Maria Cuadros Valdivia	A Visual Analytics Approach for Exploration of High-Dimensional Time Series Based on Neighbor-Joining Tree.	ICCMS	2018	DBLP DOI BibTeX RDF
25	Roberto Rodriguez Urquiaga, Ana Maria Cuadros Valdivia, Reynaldo Alfonte Zapana	A visual analytics approach for exploration of high-dimensional time series based on neighbor-joining tree.	ISSPIT	2017	DBLP DOI BibTeX RDF
25	David Hoksza, Daniel Svozil	Multiple 3D RNA Structure Superposition Using Neighbor Joining.	IEEE ACM Trans. Comput. Biol. Bioinform.	2015	DBLP DOI BibTeX RDF
25	Ravi Kumar Yadav Dega, Gunes Ercal	A comparative analysis of progressive multiple sequence alignment approaches using UPGMA and neighbor joining based guide trees.	CoRR	2015	DBLP BibTeX RDF
25	Tulaya Limpiti, Chainarong Amornbunchornvej, Apichart Intarapanich, Anunchai Assawamakin, Sissades Tongsima	iNJclust: Iterative Neighbor-Joining Tree Clustering Framework for Inferring Population Structure.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
25	Matthieu Willems, Nadia Tahiri, Vladimir Makarenkov	A new efficient algorithm for inferring explicit hybridization networks following the Neighbor-Joining principle.	J. Bioinform. Comput. Biol.	2014	DBLP DOI BibTeX RDF
25	Naama M. Kopelman, Lewi Stone, Olivier Gascuel, Noah A. Rosenberg	The Behavior of Admixed Populations in Neighbor-Joining Inference of Population Trees.	Pacific Symposium on Biocomputing	2013	DBLP BibTeX RDF
25	C. Amornbunchornvej, Tulaya Limpiti, Anunchai Assawamakin, Apichart Intarapanich, Sissades Tongsima	Iterative Neighbor-Joining tree clustering algorithm for genotypic data.	ICPR	2012	DBLP BibTeX RDF
25	Ran Zheng, Qiongyao Zhang, Hai Jin 0001, Zhiyuan Shao, Xiaowen Feng	Parallelization Mechanisms of Neighbor-Joining for CUDA Enabled Devices.	ChinaGrid	2012	DBLP DOI BibTeX RDF
25	Isaac Elias, Jens Lagergren	Fast neighbor joining.	Theor. Comput. Sci.	2009	DBLP DOI BibTeX RDF
25	Kord Eickmeyer, Peter Huggins, Lior Pachter, Ruriko Yoshida	On the optimality of the neighbor-joining algorithm.	Algorithms Mol. Biol.	2008	DBLP DOI BibTeX RDF
25	Maozu Guo 0001, Jian-Fu Li, Yang Liu 0006	A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joining.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
25	Ilan Gronau, Shlomo Moran	Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances.	J. Comput. Biol.	2007	DBLP DOI BibTeX RDF
25	Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg, Christian N. S. Pedersen, Derek Phillips	Recrafting the neighbor-joining method.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
25	Zhihua Du, Feng Lin	pNJTree: A parallel program for reconstruction of neighbor-joining tree and its application in ClustalW.	Parallel Comput.	2006	DBLP DOI BibTeX RDF
25	Luke Sheneman, Jason Evans, James A. Foster	Clearcut: a fast implementation of relaxed neighbor joining.	Bioinform.	2006	DBLP DOI BibTeX RDF
25	Radu Mihaescu, Dan Levy, Lior Pachter	Why neighbor-joining works	CoRR	2006	DBLP BibTeX RDF
25	Ningtao Chen, Baochang Shi, Nengchao Wang	Constructing Neighbor-Joining phylogenetic trees with reduced redundancy computation.	ICECS	2005	DBLP DOI BibTeX RDF
25	Jack K. Horner	A Neighbor-Joining Method for Identifying a Stage I Ovarian Cancer Signature in the Mass-Spectrum of Serum Proteins.	METMBS	2004	DBLP BibTeX RDF
25	Ana Estela Antunes da Silva, Wilfredo Jaime Puma Villanueva, Helder Knidel, Vinícius Bonato, Sérgio Furtado dos Reis, Fernando J. Von Zuben	A Multi-Neighbor-Joining Approach for Phylogenetic Tree Reconstruction and Visualization.	WOB	2004	DBLP BibTeX RDF
25	Katherine St. John, Tandy J. Warnow, Bernard M. E. Moret, Lisa Vawter	Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining.	J. Algorithms	2003	DBLP DOI BibTeX RDF
25	Katherine St. John, Tandy J. Warnow, Bernard M. E. Moret, Lisa Vawter	Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining.	SODA	2001	DBLP BibTeX RDF
25	Kevin Atteson	The Performance of Neighbor-Joining Algorithms of Phylogeny Recronstruction.	COCOON	1997	DBLP DOI BibTeX RDF
25	Kevin Atteson	The performance of the neighbor-joining method of phylogeny reconstruction.	Mathematical Hierarchies and Biology	1996	DBLP DOI BibTeX RDF
21	Róbert Busa-Fekete, András Kocsor, Csaba Bagyinka	A Multi-Stack Based Phylogenetic Tree Building Method.	ISBRA	2007	DBLP DOI BibTeX RDF	tree estimation, Multi-Stack, tree-joining operator, Phylogenetics
18	Lei Xin, Bin Ma 0002, Kaizhong Zhang	A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method.	COCOON	2007	DBLP DOI BibTeX RDF
18	Richard Desper, Olivier Gascuel	Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle.	WABI	2002	DBLP DOI BibTeX RDF
13	Frédéric Guyon, Céline Brochier-Armanet, Alain Guénoche	Comparison of alignment free string distances for complete genome phylogeny.	Adv. Data Anal. Classif.	2009	DBLP DOI BibTeX RDF	Mathematics Subject Classification (2000) 05C05, 68R15, 92B10, 90C27
13	María Jesús García-Pereira, Humberto Quesada, Armando Caballero	A First Insight into the In Silico Evaluation of the Accuracy of AFLP Markers for Phylogenetic Reconstruction.	IWANN (2)	2009	DBLP DOI BibTeX RDF	AFLP, homoplasy, simulation, accuracy, phylogenetic analysis
13	Krister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret	Approximating the true evolutionary distance between two genomes.	ACM J. Exp. Algorithmics	2008	DBLP DOI BibTeX RDF	pairwise distances, whole-genome data, Evolution, inversions, duplications
13	Guilherme Palermo Coelho, Ana Estela Antunes da Silva, Fernando J. Von Zuben	Evolving Phylogenetic Trees: A Multiobjective Approach.	BSB	2007	DBLP DOI BibTeX RDF
13	Constantinos Daskalakis, Cameron Hill, Alexander Jaffe, Radu Mihaescu, Elchanan Mossel, Satish Rao	Maximal Accurate Forests from Distance Matrices.	RECOMB	2006	DBLP DOI BibTeX RDF
13	Takeya Shigezumi	Robustness of Greedy Type Minimum Evolution Algorithms.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
13	Trinh N. D. Huynh, Jesper Jansson 0001, Nguyen Bao Nguyen, Wing-Kin Sung	Constructing a Smallest Refining Galled Phylogenetic Network.	RECOMB	2005	DBLP DOI BibTeX RDF
13	Huimin Geng, Xutao Deng, Dhundy Bastola, Hesham H. Ali	On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing.	BIBE	2005	DBLP DOI BibTeX RDF
13	Usman Roshan, Dennis R. Livesay, David La	Improved Phylogenetic Motif Detection Using Parsimony.	BIBE	2005	DBLP DOI BibTeX RDF
13	Jijun Tang, Bernard M. E. Moret	Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements.	CPM	2005	DBLP DOI BibTeX RDF
13	Conrad Shyu, Luke Sheneman, James A. Foster	Multiple Sequence Alignment with Evolutionary Computation.	Genet. Program. Evolvable Mach.	2004	DBLP DOI BibTeX RDF	progressive alignments, genetic algorithm, multiple sequence alignment, DNA sequences
13	Jijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis	Phylogenetic Reconstruction from Arbitrary Gene-Order Data.	BIBE	2004	DBLP DOI BibTeX RDF
13	Luke Sheneman, James A. Foster	Evolving Better Multiple Sequence Alignments.	GECCO (1)	2004	DBLP DOI BibTeX RDF
13	Tiffani L. Williams, Bernard M. E. Moret	An Investigation of Phylogenetic Likelihood Methods.	BIBE	2003	DBLP DOI BibTeX RDF
13	Bernard M. E. Moret, Usman Roshan, Tandy J. Warnow	Sequence-Length Requirements for Phylogenetic Methods.	WABI	2002	DBLP DOI BibTeX RDF
13	Li-San Wang	Genome Rearrangement Phylogeny Using Weighbor.	WABI	2002	DBLP DOI BibTeX RDF
13	Yonatan Bilu, Michal Linial	On the predictive power of sequence similarity in yeast.	RECOMB	2001	DBLP DOI BibTeX RDF
13	Li-San Wang, Tandy J. Warnow	Estimating true evolutionary distances between genomes.	STOC	2001	DBLP DOI BibTeX RDF
13	Li-San Wang	Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes.	WABI	2001	DBLP DOI BibTeX RDF
13	Vincent Berry, Tao Jiang 0001, Paul E. Kearney, Ming Li 0001, Todd Wareham	Quartet Cleaning: Improved Algorithms and Simulations.	ESA	1999	DBLP DOI BibTeX RDF
13	Péter L. Erdös, Mike A. Steel, László A. Székely, Tandy J. Warnow	Constructing Big Trees from Short Sequences.	ICALP	1997	DBLP DOI BibTeX RDF