Search results for "Protein"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
139	Kang-Ping Liu, Jinn-Moon Yang	A Gaussian Evolutionary Method for Predicting Protein-Protein Interaction Sites.	EvoBIO	2007	DBLP DOI BibTeX RDF	Atomic solvation parameter, Gaussian evolutionary method, protein-protein binding site, protein-protein interactions
136	Scooter Willis	Protein CorreLogo: an X3D representation of co-evolving pairs, tertiary structure, ligand binding pockets and protein-protein interactions in protein families.	Web3D	2007	DBLP DOI BibTeX RDF	Protein CorreLogo, mutual information, X3D
112	Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen 0006	Inferring domain-domain interactions from protein-protein interactions.	RECOMB	2002	DBLP DOI BibTeX RDF
112	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001, Baldev S. Sidhu	Protein Ontology: Vocabulary for Protein Data.	ICITA (1)	2005	DBLP DOI BibTeX RDF	Protein Informatics, Biomedical Systems, Data Integration, Systems Biology, Biomedical Ontologies, Protein Ontology
102	Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen 0006, Fengzhu Sun	Prediction of Protein Function Using Protein-Protein Interaction Data.	CSB	2002	DBLP DOI BibTeX RDF
101	Huang-Cheng Kuo, Kuan-Yu Su, Ping-Lin Ong, Jen-Peng Huang	Learning a prediction model for protein-protein recognition.	ICIS	2009	DBLP DOI BibTeX RDF	protein complex, protein-protein recognition, genetic programming, feature vector, binding site
95	Yasir Arafat, Gour C. Karmakar, Joarder Kamruzzaman, Juan Fernández-Recio	Predicting Protein-Protein Interface using Desolvation Energy Similarity Matching.	CIBCB	2006	DBLP DOI BibTeX RDF
93	Christopher J. O. Baker, René Witte	Mutation Mining-A Prospector's Tale.	Inf. Syst. Frontiers	2006	DBLP DOI BibTeX RDF	Protein structure annotation, Protein mutation, Haloalkane dehalogenase, Biphenyl dioxygenase, Xylanase, Data mining, Text mining
91	Lisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio	Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks.	CMSB	2009	DBLP DOI BibTeX RDF	protein-protein interaction site, patch smoothing, neural network, interacting surfaces
90	Hiroshi Mamitsuka	Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	data mining, machine learning, Biology and genetics, mining methods and algorithms
90	Tuan Nam Tran, Kenji Satou, Tu Bao Ho	Using Inductive Logic Programming for Predicting Protein-Protein Interactions from Multiple Genomic Data.	PKDD	2005	DBLP DOI BibTeX RDF
90	Alexandre G. de Brevern, Serge A. Hazout	Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties.	SPIRE	2000	DBLP DOI BibTeX RDF	Hybrid Protein Model, protein 3D-structure, physicochemical properties, protein 1D-sequence, structural alphabet, unsupervised classifier, protein blocks, sequence information, amino acid residues, pattern matching, fuzzy model, biology computing, Bayesian approach, structural biology
89	William Novak, Hongming Wang, Goran Krilov	Role of protein flexibility in the design of Bcl-XL targeting agents: insight from molecular dynamics.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Protein flexibility, Protein-protein interfaces, Bcl-XL, Ligand-protein interactions, ABT-737, Molecular dynamics
85	Ozlem Keskin, Attila Gürsoy, Ruth Nussinov	Principles of Protein Recognition and Properties of Protein-protein Interfaces.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
84	Serdar Cakici, Selcuk Sumengen, Osman Ugur Sezerman, Selim Balcisoy	DockPro: a VR-based tool for protein-protein docking problem.	VRCAI	2008	DBLP DOI BibTeX RDF	medicine and healthcare, protein-protein docking, virtual reality
82	Minghua Deng, Ting Chen 0006, Fengzhu Sun	An integrated probabilistic model for functional prediction of proteins.	RECOMB	2003	DBLP DOI BibTeX RDF	function prediction, pfam domain, Markov random field, protein-protein interaction, Gibbs sampler
80	Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre	Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	graph algorithms, genetics, biology, bioinformatics (genome or protein) databases, Computations on discrete structures
80	Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya	Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach.	ICDE Workshops	2005	DBLP DOI BibTeX RDF	heuristic method, min-cut, protein function prediction, protein-protein interaction network
79	Dong-Soo Han, Hong-Soog Kim, Woo-Hyuk Jang, Sung-Doke Lee	Domain Combination Based Protein-Protein Interaction Possibility Ranking Method.	BIBE	2004	DBLP DOI BibTeX RDF
79	N. Rattanakronkul, T. Wattarujeekrit, Kitsana Waiyamai	Predicting Protein Structural Class from Closed Protein Sequences.	PAKDD	2003	DBLP DOI BibTeX RDF	Protein Structural Class, Closed Sequence, Data Mining, Bioinformatics, CARs
78	Andrey A. Ivanov	Explore Protein-Protein Interactions for Cancer Target Discovery Using the OncoPPi Portal.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John W. Steill, Ian Ross, James A. Thomson, Ron M. Stewart	Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Yiwei Li, Lucian Ilie	Predicting Protein-Protein Interactions Using SPRINT.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Jan Byska, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková, Jan J. Palecek	Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Ina Koch, Oliver Philipp, Andrea Hamann, Heinz D. Osiewacz	Reconstruction of Protein-Protein Interaction Networks Using Homology-Based Search: Application to the Autophagy Pathway of Aging in Podospora anserina.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Chiara Pastrello, Max Kotlyar, Igor Jurisica	Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Gregorio Alanis-Lobato, Martin H. Schaefer 0001	Generation and Interpretation of Context-Specific Human Protein-Protein Interaction Networks with HIPPIE.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Farideh Halakou, Attila Gürsoy, Ozlem Keskin	Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
78	Mona Singh 0001	From Protein Interaction Networks to Protein Function.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
78	Nir Yosef, Eytan Ruppin, Roded Sharan	Cross-Species Analysis of Protein-protein Interaction Networks.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
78	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Ontological Foundation for Protein Data Models.	OTM Workshops	2005	DBLP DOI BibTeX RDF
78	Byungkyu Park, Kyungsook Han	Online Prediction of Interacting Proteins with a User-Specified Protein.	International Conference on Computational Science (3)	2005	DBLP DOI BibTeX RDF
78	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Protein Ontology Project in 2007: Looking Backward and Forward.	CBMS	2007	DBLP DOI BibTeX RDF	Protein Informatics, Data Integration, Bioinformatics, Proteomics, Data Semantics, Biomedical Ontologies, Protein Ontology
74	Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, Xiang-Sun Zhang	Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods.	ICIC (3)	2006	DBLP DOI BibTeX RDF
74	Zahra Nafar, Ashkan Golshani	Data Mining Methods for Protein-Protein Interactions.	CCECE	2006	DBLP DOI BibTeX RDF
74	Haemoon Jung, Kyungsook Han	Prediction of Protein Functions Using Protein Interaction Data.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
74	Hiroshi Mamitsuka	Efficient Mining from Heterogeneous Data Sets for Predicting Protein-Protein Interactions.	DEXA Workshops	2003	DBLP DOI BibTeX RDF
72	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Creating a Protein Ontology Resource.	CSB Workshops	2005	DBLP DOI BibTeX RDF	Protein Informatics, Biomedical Systems, Data Integration, Systems Biology, Biomedical Ontologies, Protein Ontology
72	Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald	A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.	RECOMB	2004	DBLP DOI BibTeX RDF	enzyme design, fluorescence binding assay, molecular ensemble, non-ribosomal peptide synthetase, protein flexibility, protein-ligand binding, protein design
72	L. Paul Chew, Klara Kedem	Finding the consensus shape for a protein family.	SCG	2002	DBLP DOI BibTeX RDF	protein alignment, protein families, unit-vector RMS, dynamic programming, protein structure, multiple alignment
72	Gordon M. Crippen	Protein folding potential functions.	HICSS (5)	1995	DBLP DOI BibTeX RDF	macromolecules, potential energy functions, intramolecular mechanics, protein structure recognition problem, globular protein sequence, plausible protein conformations, native conformation, single-chain proteins, nonnative structures, multichain aggregates, disulphide bonds, bound ligands, protein folding, proteins, potential functions, molecular configurations
71	Jung Eun Shim, Insuk Lee	Construction of Functional Protein Networks Using Domain Profile Associations.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
71	Genki Terashi, Charles Christoffer, Daisuke Kihara	Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
71	Thomas Gueudré, Carlo Baldassi, Andrea Pagnani, Martin Weigt	Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
71	Alfonso Valencia, Florencio Pazos	Computational Methods to Predict Protein Interaction Partners.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
71	Frank Alber, Brian T. Chait, Michael P. Rout, Andrej Sali	Integrative Structure Determination of Protein Assemblies by Satisfaction of Spatial Restraints.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
71	Benjamin A. Shoemaker, Anna R. Panchenko	Handling Diverse Protein Interaction Data: Integration, Storage and Retrieval.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
71	Sergei Maslov	Topological and Dynamical Properties of Protein Interaction Networks.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
71	Peter Uetz, Björn Titz, Gerard Cagney	Experimental Methods for Protein Interaction Identification and Characterization.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
71	Katia S. Guimarães, Teresa M. Przytycka	Protein Interaction Network Based Prediction of Domain-Domain and Domain-Peptide Interactions.	Protein-protein Interactions and Networks	2008	DBLP DOI BibTeX RDF
71	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001, Baldev S. Sidhu	OWL, Proteins and Data Integration.	Australian Conference on Artificial Intelligence	2005	DBLP DOI BibTeX RDF	Information Retrieval, Knowledge Representation, Data Integration, Biomedical Ontologies, Protein Ontology
69	Susanne Eyrisch, Volkhard Helms	What induces pocket openings on protein surface patches involved in protein-protein interactions?	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Binding pocket, CONCOORD, Normal mode analysis, Protein-protein interaction inhibition, Structure-based drug design, tCONCOORD, Molecular dynamics simulation
68	Xiang Guo, Hai Hu, Michael N. Liebman, Craig D. Shriver	Semantic Similarity-based Validation of Human Protein-Protein Interactions.	CSB Workshops	2005	DBLP DOI BibTeX RDF
68	Kyungsook Han, Hyoungguen Kim	A Mobile System for Extracting and Visualizing Protein-Protein Interactions.	EurAsia-ICT	2002	DBLP DOI BibTeX RDF
68	Alvaro J. González, Li Liao	Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction.	BICoB	2009	DBLP DOI BibTeX RDF	3DID, Support vector machines, Hidden Markov models, Domains, Protein-protein interaction
68	Conrad Plake, Jörg Hakenberg, Ulf Leser	Optimizing syntax patterns for discovering protein-protein interactions.	SAC	2005	DBLP DOI BibTeX RDF	syntax patterns, genetic algorithm, information extraction, protein-protein interactions
68	Darby Tien-Hao Chang, Chien-Yu Chen 0001, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang	An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures.	BIBE	2004	DBLP DOI BibTeX RDF	protein structural analysis, protein tertiary structure, kernel density estimation
67	Yaohang Li, Douglas Wardell, Vincent W. Freeh	Resource-efficient computing paradigm for computational protein modeling applications.	IPDPS	2009	DBLP DOI BibTeX RDF
67	Jung-Hsien Chiang, Tsung-Lu Michael Lee	In Silico Prediction of Human Protein Interactions Using Fuzzy-SVM Mixture Models and Its Application to Cancer Research.	IEEE Trans. Fuzzy Syst.	2008	DBLP DOI BibTeX RDF
67	Yi Pan 0001	Protein Structure Prediction and Its Understanding Based on Machine Learning Methods.	BIBE	2007	DBLP DOI BibTeX RDF
67	Byung-Hoon Park, Bing Zhang 0003, Tatiana V. Karpinets, Nagiza F. Samatova	Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance.	BIBM	2007	DBLP DOI BibTeX RDF
67	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Advances in Protein Ontology Project.	CBMS	2006	DBLP DOI BibTeX RDF
67	Amandeep S. Sidhu, Tharam S. Dillon, Farookh Khadeer Hussain	Accomplishments and Challenges of Protein Ontology.	COMPSAC (1)	2006	DBLP DOI BibTeX RDF
67	Namshik Han, Hyunwoo Kim, Kyungsook Han	Computational Approach to Structural Analysis of Protein-RNA Complexes.	International Conference on Computational Science	2003	DBLP DOI BibTeX RDF
67	Dianhui Wang, Nung Kion Lee, Tharam S. Dillon, Nicholas J. Hoogenraad	Protein Sequences Classification Using Modular RBF Neural Networks.	Australian Joint Conference on Artificial Intelligence	2002	DBLP DOI BibTeX RDF
67	Yu-Feng Huang, Chia-Chen Chang, Chien-Kang Huang	Massive Protein Structural Property Explorations Using New Indexing Mechanism.	ER Workshops	2007	DBLP DOI BibTeX RDF	Residue environmental sphere (RES), protein structural property mining, residue contact, disulfide bond
67	Xue-wen Chen 0001, Mei Liu, Yong Hu 0002	Integrative Neural Network Approach for Protein Interaction Prediction from Heterogeneous Data.	ADMA	2008	DBLP DOI BibTeX RDF	Interaction Network Prediction, Heterogeneous Data Integration, Integrative Neural Network, Protein-Protein Interaction
67	Kunpeng Zhang, Yun Xu, Yifei Shen, Guoliang Chen 0001	Using a Neural Networking Method to Predict the Protein Phosphorylation Sites with Specific Kinase.	ISNN (2)	2006	DBLP DOI BibTeX RDF	phosphorylation site predicting, protein kinase, PKA, IKK, Neural Network, protein structure
67	L. Paul Chew, Klara Kedem	Finding the Consensus Shape for a Protein Family.	Algorithmica	2004	DBLP DOI BibTeX RDF	Protein shape, Dynamic programming, Protein structure, Computational molecular biology
67	Pengjun Pei, Aidong Zhang	A Topological Measurement for Weighted Protein Interaction Network.	CSB	2005	DBLP DOI BibTeX RDF	weighted graph model, topological measurement, data integration, Protein-protein interaction, small world network, protein interaction network
67	Arvind Gupta, Ján Manuch, Ladislav Stacho	Inverse Protein Folding in 2D HP Mode (Extended Abstract).	CSB	2004	DBLP DOI BibTeX RDF	inverse protein folding, protein stability, protein design, HP model
67	Marcella A. McClure, Rajasekhar Raman	Parameterization studies of hidden Markov models representing highly divergent protein sequences.	HICSS (5)	1995	DBLP DOI BibTeX RDF	parameterization studies, highly divergent protein sequences, complex genome analysis, nucleic acid, molecular evolutionary mechanisms, homologous sequences, distantly related proteins, HMM approaches, multiple protein sequence alignment, highest average entropylposition model, biologically informative model, biological features, protein family, model length, training set size, biologically informative HMMs, hidden Markov models, hidden Markov models, DNA, genetics, genetics, biology computing, optimal model, protein sequences
65	Sonja Biedermann, Monika Henzinger, Christian Schulz 0003, Bernhard Schuster	Vienna Graph Clustering.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
65	Markus List, Nicolas Alcaraz, Richa Batra	De Novo Pathway-Based Classification of Breast Cancer Subtypes.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
65	Angela Re, Paola Lecca	On TD-WGcluster: Theoretical Foundations and Guidelines for the User.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
65	Xiaoyang Jing, Hong Zeng, Sheng Wang 0001, Jinbo Xu	A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
65	Nicolas Alcaraz, Anne Hartebrodt, Markus List	De Novo Pathway Enrichment with KeyPathwayMiner.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
65	Wayne B. Hayes	An Introductory Guide to Aligning Networks Using SANA, the Simulated Annealing Network Aligner.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
65	Robin Haw, Fred Loney 0001, Edison Ong, Yongqun He, Guanming Wu	Perform Pathway Enrichment Analysis Using ReactomeFIViz.	Protein-Protein Interaction Networks	2020	DBLP DOI BibTeX RDF
64	Hon Nian Chua, Wing-Kin Sung, Limsoon Wong	Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions.	BioDM	2006	DBLP DOI BibTeX RDF
63	Byungkyu Park, Kyungsook Han	Estimating the Reliability of Protein-Protein Interactions.	FBIT	2007	DBLP DOI BibTeX RDF
63	Junfeng Xia, Bing Wang 0004, De-Shuang Huang	Inferring Strengths of Protein-Protein Interaction Using Artificial Neural Network.	IJCNN	2007	DBLP DOI BibTeX RDF
62	Anna Antony, Srilaxmi Basetty, Shielly Hartanto, Mathew J. Palakal	Computational approach to biological validation of protein-protein interactions discovered using literature mining.	SAC	2008	DBLP DOI BibTeX RDF	implicit associations, protein-protein interactions, association discovery, literature mining
62	Chishe Wang, Jiaxing Cheng, Shoubao Su, Dongzhe Xu	Identification of Interface Residues Involved in Protein-Protein Interactions Using Naïve Bayes Classifier.	ADMA	2008	DBLP DOI BibTeX RDF	Naïve Bayes classifier, Sequence profile, Residue accessible surface area, Protein-protein interactions
62	Max Kotlyar, Igor Jurisica	Predicting Protein-Protein Interactions by Association Mining.	Inf. Syst. Frontiers	2006	DBLP DOI BibTeX RDF	Protein-protein interactions, Association mining
62	Martin Farach-Colton, Yang Huang, John L. L. Woolford	Discovering temporal relations in molecular pathways using protein-protein interactions.	RECOMB	2004	DBLP DOI BibTeX RDF	molecular pathways, probe interval graphs, ribosomal assembly pathway, vertex ordering, interval graphs, protein-protein interaction
62	Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data.	RECOMB	2004	DBLP DOI BibTeX RDF	heavy subgraph, protein complex, probabilistic model, conservation, comparative analysis, protein interaction network, yeast, bacteria
61	Yi Pan 0001	Protein structure prediction and understanding using machine learning methods.	GrC	2005	DBLP DOI BibTeX RDF
61	Zeyar Aung, Kian-Lee Tan	Automatic Protein Structure Classification through Structural Fingerprinting.	BIBE	2004	DBLP DOI BibTeX RDF
61	Mona Singh 0001, Peter S. Kim	Towards predicting coiled-coil protein interactions.	RECOMB	2001	DBLP DOI BibTeX RDF
61	Jinbo Xu, Bonnie Berger	Fast and accurate algorithms for protein side-chain packing.	J. ACM	2006	DBLP DOI BibTeX RDF	Protein side-chain packing, approximate algorithm, polynomial-time approximation scheme, tree decomposition
61	Rolf Backofen, Sebastian Will	A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models.	Constraints An Int. J.	2006	DBLP DOI BibTeX RDF	Face-centered cubic lattice, Constraint programming, Protein structure prediction, HP-model
61	Bill C. H. Chang, Asanga Ratnaweera, Saman K. Halgamuge, Harry C. Watson	Particle Swarm Optimisation for Protein Motif Discovery.	Genet. Program. Evolvable Mach.	2004	DBLP DOI BibTeX RDF	protein sequence motif, symbolic data optimisation, motif discovery, particle swarm optimisation
61	Michael A. Erdmann	Protein similarity from knot theory and geometric convolution.	RECOMB	2004	DBLP DOI BibTeX RDF	writhing, homotopy, protein structure, homology, robot motion planning, knot theory
61	Virginio Cantoni, Riccardo Gatti, Luca Lombardi	Towards Protein Interaction Analysis through Surface Labeling.	ICIAP	2009	DBLP DOI BibTeX RDF	surface labeling, protein-protein interaction, heat diffusion
61	Angelo Marcello Anile, Vincenzo Cutello, Giuseppe Narzisi, Giuseppe Nicosia, Salvatore Spinella	Determination of protein structure and dynamics combining immune algorithms and pattern search methods.	Nat. Comput.	2007	DBLP DOI BibTeX RDF	pattern search methods, DIRECT, protein folding, protein structure prediction, Immune Algorithms, Clonal Selection Algorithms, structural bioinformatics
61	L. Paul Chew	Exact computation of protein structure similarity.	SCG	2006	DBLP DOI BibTeX RDF	protein geometry, structure comparison, dynamic programming, global optimization, convex hull, proteins, protein structure, extreme points
61	Alexander Kister	Relationship between Amino Acids Sequences and Protein Structures: Folding Patterns and Sequence Patterns.	ISBRA	2009	DBLP DOI BibTeX RDF	Beta-sandwich proteins, supersecondary structure, protein structure classification, sequence alignment, protein folding, protein structure prediction
61	Mario Cannataro, Pietro Hiram Guzzi, Pierangelo Veltri	myMCL: A Web Portal for Protein Complexes Prediction.	CBMS	2008	DBLP DOI BibTeX RDF	Protein to Protein Interactions, Protein Complexes, MCL, Clustering
61	Robert B. Russell, R. R. Copley, Geoffrey J. Barton	Protein fold recognition from secondary structure assignments.	HICSS (5)	1995	DBLP DOI BibTeX RDF	protein fold recognition, secondary structure assignments, experimental restraints, protein structural domains, predicted secondary structure elements, connected secondary structures, plausible topologies, E. coli bio protein, SH2 fold, database, query processing, database management systems, query, errors, biology computing, proteins, chemistry computing, query pattern, database structure