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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 195 occurrences of 117 keywords
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Results
Found 600 publication records. Showing 600 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
138 | Jon M. Sorenson, Teresa Head-Gordon |
Matching simulation and experiment (extended abstract): a new simplified model for simulating protein folding. |
RECOMB |
2000 |
DBLP DOI BibTeX RDF |
|
130 | Alena Shmygelska |
An extremal optimization search method for the protein folding problem: the go-model example. |
GECCO (Companion) |
2007 |
DBLP DOI BibTeX RDF |
go-model, protein folding, extremal optimization |
124 | Hui Yang 0002, Lin Han |
An Effective Approach for Identifying Evolving Three-Dimensional Structural Motifs in Protein Folding Data. |
ADMA |
2008 |
DBLP DOI BibTeX RDF |
|
116 | Bennet Uk, Michela Taufer, Thomas Stricker, Giovanni Settanni, Andrea Cavalli |
Implementation and Characterization of Protein Folding on a Desktop Computational Grid - Is CHARMM a Suitable Candidate for the United Devices MetaProcessor? |
IPDPS |
2003 |
DBLP DOI BibTeX RDF |
widely distributed computing, CHARMM, United Devices MetaProcessor, workload characterization, protein folding, search algorithms, desktop grids |
116 | Bennet Uk, Michela Taufer, Thomas Stricker, Giovanni Settanni, Andrea Cavalli, Amedeo Caflisch |
Combining Task- and Data Parallelism to Speed up Protein Folding on a Desktop Grid Platform. |
CCGRID |
2003 |
DBLP DOI BibTeX RDF |
data and task parallelism, CHARMM, United Devices MetaProcessor, computational grid, Protein folding, best-first search |
112 | Cândida G. Silva, Vitaliy Ostropytskyy, Nuno Loureiro-Ferreira, Daniel P. Berrar, Martin T. Swain, Werner Dubitzky, Rui M. M. Brito |
P-found: The Protein Folding and Unfolding Simulation Repository. |
CIBCB |
2006 |
DBLP DOI BibTeX RDF |
|
101 | Mathieu Lonquety, Zoé Lacroix, Jacques Chomilier |
Evaluation of the Stability of Folding Nucleus upon Mutation. |
PRIB |
2008 |
DBLP DOI BibTeX RDF |
folding nucleus, point mutations, Protein folding, structure stability |
100 | Nancy M. Amato, Ken A. Dill, Guang Song |
Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. |
RECOMB |
2002 |
DBLP DOI BibTeX RDF |
|
98 | Hans-Joachim Böckenhauer, Dirk Bongartz |
Protein Folding in the HP Model on Grid Lattices with Diagonals (Extended Abstract). |
MFCS |
2004 |
DBLP DOI BibTeX RDF |
|
95 | Jaroslaw Kostrowicki, Harold A. Scheraga |
Some approaches to the multiple-minima problem in protein folding. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
95 | Andrej Sali, Eugene I. Shakhnovich, Martin Karplus |
Thermodynamics and kinetics of protein folding. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
95 | Richard H. Byrd, Elizabeth Eskow, André van der Hoek, Robert B. Schnabel, Chung-Shang Shao, Zhihong Zou |
Global optimization methods for protein folding problems. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
95 | Costas D. Maranas, Ioannis P. Androulakis, Christodoulos A. Floudas |
A deterministic global optimization approach for the protein folding problem. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
90 | Angelo Marcello Anile, Vincenzo Cutello, Giuseppe Narzisi, Giuseppe Nicosia, Salvatore Spinella |
Lipschitzian Pattern Search and Immunological Algorithm with Quasi-Newton Method for the Protein Folding Problem: An Innovative Multistage Approach. |
WIRN/NAIS |
2005 |
DBLP DOI BibTeX RDF |
Deterministic Search, Bioinformatics, DIRECT, Protein Folding, Protein Structure Prediction, Hybrid methods, Immune Algorithms, Quasi-Newton method, Clonal Selection Algorithms |
88 | Roberto Santana 0001, Pedro Larrañaga, José Antonio Lozano 0001 |
Protein Folding in 2-Dimensional Lattices with Estimation of Distribution Algorithms. |
ISBMDA |
2004 |
DBLP DOI BibTeX RDF |
Estimation of Distribution Algorithms, protein folding, HP model |
85 | John Atkins, William E. Hart |
On the Intractability of Protein Folding with a Finite Alphabet of Amino Acids. |
Algorithmica |
1999 |
DBLP DOI BibTeX RDF |
Protein folding, Protein structure prediction, Intractability |
83 | Heitor Silvério Lopes, Reginaldo Bitello |
A Differential Evolution Approach for Protein Folding Using a Lattice Model. |
J. Comput. Sci. Technol. |
2007 |
DBLP DOI BibTeX RDF |
evolutionary computation, bioinformatics, differential evolution, protein folding |
82 | Arvind Gupta, Ján Manuch, Ladislav Stacho |
Inverse Protein Folding in 2D HP Mode (Extended Abstract). |
CSB |
2004 |
DBLP DOI BibTeX RDF |
inverse protein folding, protein stability, protein design, HP model |
81 | Gabriela Ochoa, Gabi Escuela, Natalio Krasnogor |
Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding. |
Artificial Evolution |
2005 |
DBLP DOI BibTeX RDF |
|
80 | Gemma B. Danks, Susan Stepney, Leo S. D. Caves |
Folding Protein-Like Structures with Open L-Systems. |
ECAL |
2007 |
DBLP DOI BibTeX RDF |
open-L-systems, L-systems, Protein-folding |
80 | Thang Nguyen Bui, Gnanasekaran Sundarraj |
An efficient genetic algorithm for predicting protein tertiary structures in the 2D HP model. |
GECCO |
2005 |
DBLP DOI BibTeX RDF |
2D HP model, protein folding problem, genetic algorithm |
80 | Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001 |
Ontological Foundation for Protein Data Models. |
OTM Workshops |
2005 |
DBLP DOI BibTeX RDF |
|
79 | Xiaolong Zhang 0002, Wen Cheng |
An Improved Tabu Search Algorithm for 3D Protein Folding Problem. |
PRICAI |
2008 |
DBLP DOI BibTeX RDF |
protein folding prediction, off-lattice model, Tabu search |
79 | Xiaolong Zhang 0002, Xiaoli Lin, Chengpeng Wan, Tingting Li |
Genetic-Annealing Algorithm for 3D Off-lattice Protein Folding Model. |
PAKDD Workshops |
2007 |
DBLP DOI BibTeX RDF |
3D Off-Lattice Model, Genetic-Annealing Algorithm, Protein folding |
79 | Guang Song, Nancy M. Amato |
Using motion planning to study protein folding pathways. |
RECOMB |
2001 |
DBLP DOI BibTeX RDF |
|
78 | Xiaomin Hu, Jun Zhang 0003, Yun Li 0002 |
Flexible Protein Folding by Ant Colony Optimization. |
Computational Intelligence in Biomedicine and Bioinformatics |
2008 |
DBLP DOI BibTeX RDF |
|
76 | Gordon M. Crippen |
Protein folding potential functions. |
HICSS (5) |
1995 |
DBLP DOI BibTeX RDF |
macromolecules, potential energy functions, intramolecular mechanics, protein structure recognition problem, globular protein sequence, plausible protein conformations, native conformation, single-chain proteins, nonnative structures, multichain aggregates, disulphide bonds, bound ligands, protein folding, proteins, potential functions, molecular configurations |
76 | Panos M. Pardalos, David Shalloway, Guoliang Xue (eds.) |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, Proceedings of a DIMACS Workshop, USA, March 20-21, 1995 |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1996 |
DBLP DOI BibTeX RDF |
|
76 | Andrew T. Phillips, J. Ben Rosen, Vann Howard Walke |
Molecular structure determination by convex, global underestimation of local energy minima. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Jorge J. Moré, Zhijun Wu |
E-optimal solutions to distance geometry problems via global continuation. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | |
Preface. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP BibTeX RDF |
|
76 | Xiche Hu, Dong Xu, Kenneth Hamer, Klaus Schulten, Juergen Koepke, Hartmut Michel |
Knowledge based structure prediction of the light-harvesting complex II of Rhodospirillum molishianum. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Herbert A. Hauptman |
A minimal principle in the phase problem of X-ray crystallography. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Ruth Pachter, Zhiqiang Wang, James A. Lupo, Steven B. Fairchild, Brian Sennett |
The design of chromophore containing biomolecules. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Jun Gu, Bin Du |
A multispace search algorithm for molecular energy minimization. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Bruce W. Church, Matej Oresic, David Shalloway |
Tracking metastable states to free-energy global minima. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Robert E. Bruccoleri |
Energy directed conformational search of protein loops and segments. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | Patricia Amara, Jianpeng Ma, John E. Straub |
Global minimization on rugged energy landscapes. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP DOI BibTeX RDF |
|
76 | |
Foreword. |
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding |
1995 |
DBLP BibTeX RDF |
|
75 | Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht |
Landscape Analysis for Protein-Folding Simulation in the H-P Model. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
75 | Alessandro Dal Palù, Agostino Dovier, Federico Fogolari |
Protein Folding Simulation in CCP. |
ICLP |
2004 |
DBLP DOI BibTeX RDF |
|
70 | Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht |
Stochastic Protein Folding Simulation in the d-Dimensional HP-Model. |
BIRD |
2007 |
DBLP DOI BibTeX RDF |
|
70 | Tsung-Han Chiang 0001, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe |
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. |
RECOMB |
2006 |
DBLP DOI BibTeX RDF |
|
69 | Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001, Baldev S. Sidhu |
OWL, Proteins and Data Integration. |
Australian Conference on Artificial Intelligence |
2005 |
DBLP DOI BibTeX RDF |
Information Retrieval, Knowledge Representation, Data Integration, Biomedical Ontologies, Protein Ontology |
68 | Angelo Marcello Anile, Vincenzo Cutello, Giuseppe Narzisi, Giuseppe Nicosia, Salvatore Spinella |
Determination of protein structure and dynamics combining immune algorithms and pattern search methods. |
Nat. Comput. |
2007 |
DBLP DOI BibTeX RDF |
pattern search methods, DIRECT, protein folding, protein structure prediction, Immune Algorithms, Clonal Selection Algorithms, structural bioinformatics |
68 | David van der Spoel, Alexandra Patriksson, M. Marvin Seibert |
Protein Folding Properties from Molecular Dynamics Simulations. |
PARA |
2006 |
DBLP DOI BibTeX RDF |
|
68 | Alantha Newman, Matthias Ruhl |
Combinatorial Problems on Strings with Applications to Protein Folding. |
LATIN |
2004 |
DBLP DOI BibTeX RDF |
|
67 | Shawna L. Thomas, Nancy M. Amato |
Parallel Protein Folding with STAPL. |
IPDPS |
2004 |
DBLP DOI BibTeX RDF |
|
66 | Alexander Kister |
Relationship between Amino Acids Sequences and Protein Structures: Folding Patterns and Sequence Patterns. |
ISBRA |
2009 |
DBLP DOI BibTeX RDF |
Beta-sandwich proteins, supersecondary structure, protein structure classification, sequence alignment, protein folding, protein structure prediction |
65 | Jing-Fa Liu, Wen-Qi Huang |
Quasi-Physical Algorithm of an Off-Lattice Model for Protein Folding Problem. |
J. Comput. Sci. Technol. |
2007 |
DBLP DOI BibTeX RDF |
off-lattice model, quasi-physical algorithm, off-trap strategy, protein folding, NP-hard problem |
65 | Christopher James Langmead, Sumit Kumar Jha 0001 |
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. |
WABI |
2007 |
DBLP DOI BibTeX RDF |
|
65 | Sebastian Potzsch, Gerik Scheuermann, Peter F. Stadler, Michael T. Wolfinger, Christoph Flamm |
Visualization of Lattice-Based Protein Folding Simulations. |
IV |
2006 |
DBLP DOI BibTeX RDF |
Information visualization, multiple views, design guidelines, focus+context, overview+detail |
64 | Shawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato |
Simulating Protein Motions with Rigidity Analysis. |
RECOMB |
2006 |
DBLP DOI BibTeX RDF |
|
64 | Yu-Ying Shih, Michael Ho |
Fast parallel bio-molecular logic computing algorithms: Protein folding. |
BIBE |
2008 |
DBLP DOI BibTeX RDF |
|
61 | Rolf Backofen, Sebastian Will |
A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models. |
Constraints An Int. J. |
2006 |
DBLP DOI BibTeX RDF |
Face-centered cubic lattice, Constraint programming, Protein structure prediction, HP-model |
60 | Miguel M. F. Bugalho, Arlindo L. Oliveira |
An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures. |
BSB |
2008 |
DBLP DOI BibTeX RDF |
Protein models, discrete state models, side chain positioning, protein folding |
60 | James R. Green, Michael J. Korenberg |
Nonlinear System Identification Provides Insight Into Protein Folding. |
CCECE |
2006 |
DBLP DOI BibTeX RDF |
|
60 | Juan Liu, Longhui Wang, Lianlian He, Feng Shi |
Analysis of Toy Model for Protein Folding Based on Particle Swarm Optimization Algorithm. |
ICNC (3) |
2005 |
DBLP DOI BibTeX RDF |
|
60 | Michele Vendruscolo |
Protein folding using inter-residue contacts. |
3DPVT |
2002 |
DBLP DOI BibTeX RDF |
|
60 | Juan Frausto Solís, Xavier Soberon-Mainero, Ernesto Liñán-García |
MultiQuenching Annealing Algorithm for Protein Folding Problem. |
MICAI |
2009 |
DBLP DOI BibTeX RDF |
Simulated Annealing, Protein Folding, Peptide |
60 | Huafeng Chen, Jianyong Wang |
An Improved Population Migration Algorithm for the Prediction of Protein Folding. |
ISNN (3) |
2009 |
DBLP DOI BibTeX RDF |
Protein-folding lattice model, Improved population migration algorithm, Stability |
60 | Sergio Raul Duarte Torres, David Camilo Becerra Romero, Luis Fernando Niño Vasquez, Yoan José Pinzón Ardila |
A novel ab-initio genetic-based approach for protein folding prediction. |
GECCO |
2007 |
DBLP DOI BibTeX RDF |
3D- FCC spatial representation, ab-initio methods, protein folding problem, genetic algorithms |
60 | Xiaomei Li |
Protein Folding Simulation with New Move Set in 3D Lattice Model. |
International Conference on Computational Science (2) |
2007 |
DBLP DOI BibTeX RDF |
Protein folding simulation, 3D lattice model, move set |
60 | Juan Frausto Solís, E. F. Román, David Romero 0003, Xavier Soberon, Ernesto Liñán-García |
Analytically Tuned Simulated Annealing Applied to the Protein Folding Problem. |
International Conference on Computational Science (2) |
2007 |
DBLP DOI BibTeX RDF |
Simulated Annealing, Protein Folding, Peptide |
59 | Frederic T. Stahl, Daniel P. Berrar, Cândida G. Silva, R. J. Rodrigues, Rui M. M. Brito, Werner Dubitzky |
Grid warehousing of molecular dynamics protein unfolding data. |
CCGRID |
2005 |
DBLP DOI BibTeX RDF |
|
58 | Alena Shmygelska, Holger H. Hoos |
An Improved Ant Colony Optimisation Algorithm for the 2D HP Protein Folding Problem. |
AI |
2003 |
DBLP DOI BibTeX RDF |
|
58 | Yu-Feng Huang, Chia-Chen Chang, Chien-Kang Huang |
Massive Protein Structural Property Explorations Using New Indexing Mechanism. |
ER Workshops |
2007 |
DBLP DOI BibTeX RDF |
Residue environmental sphere (RES), protein structural property mining, residue contact, disulfide bond |
58 | Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio |
Reconstruction of 3D Structures from Protein Contact Maps. |
ISBRA |
2007 |
DBLP DOI BibTeX RDF |
|
57 | Yen-Chu Hsu, Chien-Ming Chen, Tun-Wen Pai, Jyh-Fu Jeng, Chin-Hua Hu, Wen-Shyong Tzou |
Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection. |
ICA3PP |
2009 |
DBLP DOI BibTeX RDF |
protein sequence comparison, secondary structure element alignment, length encoded profile, dynamic programming, protein folding |
56 | Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta |
A Robust Class of Stable Proteins in the 2D HPC Model. |
BIRD |
2008 |
DBLP DOI BibTeX RDF |
|
53 | M. V. Judy, K. S. Ravichandran 0001 |
A solution to protein folding problem using a genetic algorithm with modified keep best reproduction strategy. |
IEEE Congress on Evolutionary Computation |
2007 |
DBLP DOI BibTeX RDF |
|
53 | Anna Gambin, Damian Wójtowicz |
Almost FPRAS for Lattice Models of Protein Folding. |
WEA |
2005 |
DBLP DOI BibTeX RDF |
|
53 | Alena Shmygelska, Rosalía Aguirre-Hernández, Holger H. Hoos |
An Ant Colony Optimization Algorithm for the 2D HP Protein Folding Problem. |
Ant Algorithms |
2002 |
DBLP DOI BibTeX RDF |
|
50 | Rolf Backofen, Sebastian Will |
A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods. |
ICLP |
2003 |
DBLP DOI BibTeX RDF |
|
48 | Feng Zhao, Jian Peng 0001, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu |
A Probabilistic Graphical Model for Ab Initio Folding. |
RECOMB |
2009 |
DBLP DOI BibTeX RDF |
ab initio folding, conditional random fields (CRFs), directional statistics, fragment assembly, protein structure prediction, lattice model |
47 | Martin T. Swain, Vitaliy Ostropytskyy, Cândida G. Silva, Frederic T. Stahl, Olivier Riche, Rui M. M. Brito, Werner Dubitzky |
Grid Computing Solutions for Distributed Repositories of Protein Folding and Unfolding Simulations. |
ICCS (3) |
2008 |
DBLP DOI BibTeX RDF |
|
47 | Hans-Joachim Böckenhauer, Abu Zafer M. Dayem Ullah, Leonidas Kapsokalivas, Kathleen Steinhöfel |
A Local Move Set for Protein Folding in Triangular Lattice Models. |
WABI |
2008 |
DBLP DOI BibTeX RDF |
|
47 | Mika Takata, Yasuo Matsuyama |
Protein Folding Classification by Committee SVM Array. |
ICONIP (2) |
2008 |
DBLP DOI BibTeX RDF |
|
47 | Nilton B. Armstrong, Heitor S. Lopes, Carlos Raimundo Erig Lima |
Reconfigurable Computing for Accelerating Protein Folding Simulations. |
ARC |
2007 |
DBLP DOI BibTeX RDF |
|
47 | David A. Pelta, Alberto Carrascal |
Inverse Protein Folding on 2D Off-Lattice Model: Initial Results and Perspectives. |
EvoBIO |
2007 |
DBLP DOI BibTeX RDF |
|
47 | Alexandru-Adrian Tantar, Nouredine Melab, El-Ghazali Talbi, Bernard Toursel |
Solving the Protein Folding Problem with a Bicriterion Genetic Algorithm on the Grid. |
CCGRID |
2006 |
DBLP DOI BibTeX RDF |
|
47 | Yiming Li 0005, Shao-Ming Yu |
Parallel Numerical Solution to Large-Scale Eigenvalue Problem in Master Equation of Protein Folding Kinetics. |
AINA (2) |
2006 |
DBLP DOI BibTeX RDF |
|
47 | Tamjidul Hoque, Madhu Chetty, Laurence Dooley |
A new guided genetic algorithm for 2D hydrophobic-hydrophilic model to predict protein folding. |
Congress on Evolutionary Computation |
2005 |
DBLP DOI BibTeX RDF |
|
47 | Bin Fu, Wei Wang 0051 |
A 2O(n1-(1/d)log n) Time Algorithm for d-Dimensional Protein Folding in the HP-Model. |
ICALP |
2004 |
DBLP DOI BibTeX RDF |
|
47 | Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio |
Reconstruction of 3D Structures From Protein Contact Maps. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
Protein structure prediction, Combinatorial algorithms, Molecular Modeling, Contact map |
47 | Deborah K. Weisser, Judith Klein-Seetharaman |
Identification of fundamental building blocks in protein sequences using statistical association measures. |
SAC |
2004 |
DBLP DOI BibTeX RDF |
feature prediction, rhodopsin, mutual information, G-protein coupled receptors |
46 | Stanislaw Oldziej, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga |
Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations. |
BIBE |
2010 |
DBLP DOI BibTeX RDF |
hydrophobic interactions, coarsegrained force fields, protein folding, temperature dependence |
46 | Ruth Pachter, Zhiqiang Wang |
Adaptive Simulated Annealing and its Application to Protein Folding. |
Encyclopedia of Optimization |
2009 |
DBLP DOI BibTeX RDF |
Adaptive simulated annealing, Met-Enkephalin, Poly(L-Alanine), Optimization, Protein folding |
46 | John L. Klepeis, Christodoulos A. Floudas |
Multiple Minima Problem in Protein Folding: aplhaBB Global Optimization Approach. |
Encyclopedia of Optimization |
2009 |
DBLP DOI BibTeX RDF |
Multiple minima, Global optimization, Protein folding, ?BB |
46 | Daniel R. Ripoll, Adam Liwo, Harold A. Scheraga |
Global Optimization in Protein Folding. |
Encyclopedia of Optimization |
2009 |
DBLP DOI BibTeX RDF |
Multiple-minima problem, Global optimization, Markov process, Molecular dynamics, Protein folding |
46 | Yuko Okamoto |
Monte-Carlo Simulated Annealing in Protein Folding. |
Encyclopedia of Optimization |
2009 |
DBLP DOI BibTeX RDF |
Tertiary structure prediction, ?-helix, ?-sheet, Simulated annealing, Protein folding |
46 | Ioan Andricioaei, John E. Straub |
Simulated Annealing Methods in Protein Folding. |
Encyclopedia of Optimization |
2009 |
DBLP DOI BibTeX RDF |
Molecular optimization, Protein folding |
46 | Michael Wagner 0010, Jaroslaw Meller, Ron Elber |
Large-scale linear programming techniques for the design of protein folding potentials. |
Math. Program. |
2004 |
DBLP DOI BibTeX RDF |
PCx, Linear feasibility, Parallel processing, Linear programming, Protein folding, Interior-point algorithm |
46 | Neal Lesh, Michael Mitzenmacher, Sue Whitesides |
A complete and effective move set for simplified protein folding. |
RECOMB |
2003 |
DBLP DOI BibTeX RDF |
local moves, tabu search, protein folding |
45 | Daniel Chu, Albert Y. Zomaya |
Parallel Ant Colony Optimization for 3D Protein Structure Prediction using the HP Lattice Model. |
Parallel Evolutionary Computations |
2006 |
DBLP DOI BibTeX RDF |
|
45 | Lech Znamirowski |
Non-gradient, Sequential Algorithm for Simulation of Nascent Polypeptide Folding. |
International Conference on Computational Science (1) |
2005 |
DBLP DOI BibTeX RDF |
|
42 | David N. Olivieri |
Iterative Lattice Protein Design Using Template Matching. |
IWANN (2) |
2009 |
DBLP DOI BibTeX RDF |
|
42 | Tamjidul Hoque, Madhu Chetty, Laurence Dooley |
Efficient Computation of Fitness Function by Pruning in Hydrophobic-Hydrophilic Model. |
ISBMDA |
2005 |
DBLP DOI BibTeX RDF |
|
42 | Carolina P. de Almeida, Richard A. Gonçalves, Myriam Regattieri Delgado |
A Hybrid Immune-Based System for the Protein Folding Problem. |
EvoCOP |
2007 |
DBLP DOI BibTeX RDF |
|
42 | Yiming Li |
Numerical Solutions of Master Equation for Protein Folding Kinetics. |
ICPADS (2) |
2005 |
DBLP DOI BibTeX RDF |
|
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