Search results for "Smith-Waterman"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
117	Xiandong Meng, Vipin Chaudhary	Bio-sequence analysis with cradle's 3SoCTM software scalable system on chip.	SAC	2004	DBLP DOI BibTeX RDF	3SoC chip, Digital Signal Processors, Smith-Waterman algorithm
112	Jeffrey Allred, Jack Coyne, William Lynch, Vincent Natoli, Joseph Grecco, Joel Morrissette	Smith-Waterman implementation on a FSB-FPGA module using the Intel Accelerator Abstraction Layer.	IPDPS	2009	DBLP DOI BibTeX RDF
112	Shannon Steinfadt, Johnnie W. Baker	SWAMP: Smith-Waterman using associative massive parallelism.	IPDPS	2008	DBLP DOI BibTeX RDF
112	Mustafa Gök, Çaglar Yilmaz	Efficient Cell Designs for Systolic Smith-Waterman Implementations.	FPL	2006	DBLP DOI BibTeX RDF
105	Peiheng Zhang, Guangming Tan, Guang R. Gao	Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform.	HPRCTA	2007	DBLP DOI BibTeX RDF	reconfigurable supercomputing, FPGA, coprocessor, Smith-Waterman algorithm
92	Shuangyuan Wu, Shihong Xia, Zhaoqi Wang, Chunpeng Li	Efficient motion data indexing and retrieval with local similarity measure of motion strings.	Vis. Comput.	2009	DBLP DOI BibTeX RDF	Indexing, Self-organizing map, Retrieval, Smith-Waterman algorithm, Motion capture data
87	Brandon Harris, Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain	A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP.	FPL	2007	DBLP DOI BibTeX RDF
87	Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana	Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations.	WEA	2005	DBLP DOI BibTeX RDF
87	Chi Wai Yu, K. H. Kwong, Kin-Hong Lee, Philip Heng Wai Leong	A Smith-Waterman Systolic Cell.	FPL	2003	DBLP DOI BibTeX RDF
74	Gabriel Caffarena, Slobodan Bojanic, Juan A. López, Carlos E. Pedreira, Octavio Nieto-Taladriz	High-speed systolic array for gene matching.	FPGA	2004	DBLP DOI BibTeX RDF
74	Stefan Dydel, Piotr Bala	Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices.	FPL	2004	DBLP DOI BibTeX RDF
74	Eric Breimer, Mark K. Goldberg	Learning Significant Alignments: An Alternative to Normalized Local Alignment.	ISMIS	2002	DBLP DOI BibTeX RDF
74	Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner	A new approach to sequence comparison: normalized sequence alignment.	RECOMB	2001	DBLP DOI BibTeX RDF
68	Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo	CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences.	PPoPP	2010	DBLP DOI BibTeX RDF	biological sequence comparison, gpu, smith-waterman
68	Shuangyuan Wu, Zhaoqi Wang, Shihong Xia	Indexing and retrieval of human motion data by a hierarchical tree.	VRST	2009	DBLP DOI BibTeX RDF	indexing, self-organizing map, motion capture, retrieval, hierarchical clustering, Smith-Waterman algorithm
68	Takahisa Ota, Shigeru Masuyama	Automatic plagiarism detection among term papers.	IUCS	2009	DBLP DOI BibTeX RDF	partial text alignment, term papers, dynamic programming, plagiarism detection, Smith-Waterman algorithm
68	Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dimitrios S. Nikolopoulos	Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine.	Conf. Computing Frontiers	2008	DBLP DOI BibTeX RDF	wavefront algorithms, cell broadband engine, smith-waterman
68	Somesh Jha, Louis Kruger, Vitaly Shmatikov	Towards Practical Privacy for Genomic Computation.	SP	2008	DBLP DOI BibTeX RDF	Privacy, Edit Distance, Genome, Secure Multi-Party Computation, Smith-Waterman
68	Chunyan Wang 0002, Paul M. K. Gordon, Andrei L. Turinsky, Jason Burgess, Terry Dalton, Christoph W. Sensen	Combining a High-Throughput Bioinformatics Grid and Bioinformatics Web Services.	GCCB	2006	DBLP DOI BibTeX RDF	BioMOBY, Sun N1 Grid Engine, Web services, grid, hidden Markov model, Bioinformatics, sequence alignment, Smith-Waterman
68	Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell	Hyper customized processors for bio-sequence database scanning on FPGAs.	FPGA	2005	DBLP DOI BibTeX RDF	dynamic re-configuration, FPGA, bio-informatics, Smith-Waterman
62	Zubair Nawaz, Zaid Al-Ars, Koen Bertels, Mudassir Shabbir	Acceleration of Smith-Waterman using Recursive Variable Expansion.	DSD	2008	DBLP DOI BibTeX RDF
62	Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara	Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU.	BIBE	2008	DBLP DOI BibTeX RDF
62	Daniel E. Riedel, Svetha Venkatesh, Wanquan Liu	A Smith-Waterman Local Alignment Approach for Spatial Activity Recognition.	AVSS	2006	DBLP DOI BibTeX RDF
62	Yang Liu, Wayne Huang 0002, John Johnson, Sheila Vaidya	GPU Accelerated Smith-Waterman.	International Conference on Computational Science (4)	2006	DBLP DOI BibTeX RDF
62	Patrick May, Gunnar W. Klau, Markus Bauer 0001, Thomas Steinke 0001	Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs.	GCCB	2006	DBLP DOI BibTeX RDF
62	Gene Myers, Richard Durbin	Invited Lecture - Accelerating Smith-Waterman Searches.	WABI	2002	DBLP DOI BibTeX RDF
50	Gregory M. Striemer, Ali Akoglu	Sequence alignment with GPU: Performance and design challenges.	IPDPS	2009	DBLP DOI BibTeX RDF
50	Betul Buyukkurt, Walid A. Najjar	Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs.	FPL	2008	DBLP DOI BibTeX RDF
50	Xinghui Wang, Du Xu	An Efficient Sequence Alignment Algorithm of Network Traffic.	ICNSC	2008	DBLP DOI BibTeX RDF
50	Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, Rajan Arora, Maria Ganzha	Whole Genome Comparison on a Network of Workstations.	ISPDC	2007	DBLP DOI BibTeX RDF
50	Khaled Benkrid, Ying Liu 0003, Abdsamad Benkrid	Design and Implementation of a Highly Parameterised FPGA-Based Skeleton for Pairwise Biological Sequence Alignment.	FCCM	2007	DBLP DOI BibTeX RDF
50	J. Javier Martínez-Álvarez, F. Javier Toledo-Moreo, José Manuel Ferrández de Vicente	Discrete-Time Cellular Neural Networks in FPGA.	FCCM	2007	DBLP DOI BibTeX RDF
50	Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann	Local Alignment of RNA Sequences with Arbitrary Scoring Schemes.	CPM	2006	DBLP DOI BibTeX RDF
50	Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Schröder, Wolfgang Müller-Wittig	Bio-sequence database scanning on a GPU.	IPDPS	2006	DBLP DOI BibTeX RDF
50	Friman Sánchez, Esther Salamí, Alex Ramírez, Mateo Valero	Performance Analysis of Sequence Alignment Applications.	IISWC	2006	DBLP DOI BibTeX RDF
50	Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana	Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations.	IPDPS	2005	DBLP DOI BibTeX RDF
50	Greg Knowles, Paul Gardner-Stephen	A New Hardware Architecture for Genomic and Proteomic Sequence Alignment.	CSB	2004	DBLP DOI BibTeX RDF
50	Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher	Sequence comparison on a cluster of workstations using the PVM system.	IPPS	1995	DBLP DOI BibTeX RDF	PVM system, molecular biology research, DNA data, Intel iPSC/860 hypercube, Internet servers GRAIL, GENQUEST, Internet, performance, hypercube networks, DNA, cluster of workstations, massively parallel computer, medical computing, sequence comparison, molecular biophysics
43	Xiandong Meng, Vipin Chaudhary	A High-Performance Heterogeneous Computing Platform for Biological Sequence Analysis.	IEEE Trans. Parallel Distributed Syst.	2010	DBLP DOI BibTeX RDF	Index Term—Heterogeneous computing platform, FPGA, dynamic programming, MPI, SIMD, sequence alignment, HPC, Smith-Waterman algorithm, SSE2
43	Sunita Chandrasekaran, Shilpa Shanbagh, Douglas L. Maskell	A dependency graph based methodology for parallelizing HLL applications on FPGA (abstract only).	FPGA	2010	DBLP DOI BibTeX RDF	fpgas, bioinformatics, sequence alignment, data dependency analysis, smith-waterman algorithm
43	David Hoksza	Improved Alignment of Protein Sequences Based on Common Parts.	ISBRA	2008	DBLP DOI BibTeX RDF	Smith-Waterman algorithm, protein databases
43	Xiandong Meng, Vipin Chaudhary	An adaptive data prefetching scheme for biosequence database search on reconfigurable platforms.	SAC	2007	DBLP DOI BibTeX RDF	FPGA, data prefetching, DMA, Smith-Waterman algorithm
43	Le Phong Bao Vuong, Xiaoying Gao	Using Clustering for Web Information Extraction.	Australian Conference on Artificial Intelligence	2007	DBLP DOI BibTeX RDF	clustering, Information extraction, Smith-Waterman algorithm
38	Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou, Alexander M. Rush, Peter Koo, Sergey Ovchinnikov	End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman.	Bioinform.	2023	DBLP DOI BibTeX RDF
38	Yaning Wang, Zhiguang Chen, Yuxiao Han	Accelerating the Smith-Waterman algorithm by GPU for high-throughput sequence alignment.	MICML	2023	DBLP DOI BibTeX RDF
38	Junhyuk Baik, Donghui Lee, Yongtae Kim	A Smith-Waterman Hardware Accelerator Design using Sliding Window for Genomic Sequence Alignment.	ISOCC	2023	DBLP DOI BibTeX RDF
38	Konstantina Koliogeorgi, Dimitrios Soudris, Sotirios Xydis	Profile-Driven Banded Smith-Waterman acceleration for Short Read Alignment.	DAC	2023	DBLP DOI BibTeX RDF
38	Manuel Costanzo, Enzo Rucci, Carlos García Sánchez 0001, Marcelo R. Naiouf, Manuel Prieto-Matías	Migrating CUDA to oneAPI: A Smith-Waterman Case Study.	CoRR	2022	DBLP DOI BibTeX RDF
38	Rafael Hidalgo, Anthony DeVito, Nesreen Salah, Aparna S. Varde, Robert W. Meredith	Inferring Phylogenetic Relationships using the Smith-Waterman Algorithm and Hierarchical Clustering.	IEEE Big Data	2022	DBLP DOI BibTeX RDF
38	Manuel Costanzo, Enzo Rucci, Carlos García Sánchez 0001, Marcelo R. Naiouf, Manuel Prieto-Matías	Migrating CUDA to oneAPI: A Smith-Waterman Case Study.	IWBBIO (2)	2022	DBLP DOI BibTeX RDF
38	Luyi Li, Jun Lin 0001, Zhongfeng Wang 0001	PipeBSW: A Two-Stage Pipeline Structure for Banded Smith-Waterman Algorithm on FPGA.	ISVLSI	2021	DBLP DOI BibTeX RDF
38	Mahdi Taheri, Hamed Zandevakili, Ali Mahani 0001	A high-performance MEMRISTOR-based Smith-Waterman DNA sequence alignment Using FPNI structure.	CoRR	2020	DBLP BibTeX RDF
38	Yujie Zhang, Jiajun Wu 0004, Minghao Li, Jun Lin 0001, Zhongfeng Wang 0001	A Three-Level Scoring System for Fast Similarity Evaluation Based on Smith-Waterman Algorithm.	ISCAS	2020	DBLP DOI BibTeX RDF
38	Takahiro Nishimura, Jacir Luiz Bordim, Yasuaki Ito, Koji Nakano	Accelerating the Smith-Waterman Algorithm Using the Bitwise Parallel Bulk Computation Technique on the GPU.	IEICE Trans. Inf. Syst.	2019	DBLP DOI BibTeX RDF
38	Huihui Zou, Shanjiang Tang, Ce Yu, Hao Fu, Yusen Li, Wenjie Tang	ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture.	Int. J. Parallel Program.	2019	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García Sánchez 0001, Guillermo Botella Juan, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías	SWIMM 2.0: Enhanced Smith-Waterman on Intel's Multicore and Manycore Architectures Based on AVX-512 Vector Extensions.	Int. J. Parallel Program.	2019	DBLP DOI BibTeX RDF
38	Roman Snytsar	De(con)struction of the lazy-F loop: improving performance of Smith Waterman alignment.	CoRR	2019	DBLP BibTeX RDF
38	D. Venkata Vara Prasad, Suresh Jaganathan	Improving the performance of Smith-Waterman sequence algorithm on GPU using shared memory for biological protein sequences.	Clust. Comput.	2019	DBLP DOI BibTeX RDF
38	Meysam Roodi, Andreas Moshovos	SW+: On Accelerating Smith-Waterman Execution of GATK HaplotypeCaller.	CIBB	2019	DBLP DOI BibTeX RDF
38	Roman Snytsar	De(con) Struction of the Lazy-F Loop: Improving Performance of Smith Waterman Alignment.	BIBE	2019	DBLP DOI BibTeX RDF
38	Konstantina Koliogeorgi, Nils Voss, Sotiria Fytraki, Sotirios Xydis, Georgi Gaydadjiev, Dimitrios Soudris	Dataflow Acceleration of Smith-Waterman with Traceback for High Throughput Next Generation Sequencing.	FPL	2019	DBLP DOI BibTeX RDF
38	Alexander Tiskin	Bounded-Length Smith-Waterman Alignment.	WABI	2019	DBLP DOI BibTeX RDF
38	Ibrahim M. El-Henawy, Kareem Ahmed, Hamdi Mahmoud	Action recognition using fast HOG3D of integral videos and Smith-Waterman partial matching.	IET Image Process.	2018	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto 0001	SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences.	BMC Syst. Biol.	2018	DBLP DOI BibTeX RDF
38	Marek Palkowski, Wlodzimierz Bielecki	Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences.	J. Comput. Biol.	2018	DBLP DOI BibTeX RDF
38	Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars	Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM.	BIBE	2018	DBLP DOI BibTeX RDF
38	Yi-Lun Liao, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu	Adaptively Banded Smith-Waterman Algorithm for Long Reads and Its Hardware Accelerator.	ASAP	2018	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías	First Experiences Optimizing Smith-Waterman on Intel's Knights Landing Processor.	CoRR	2017	DBLP BibTeX RDF
38	Lorenzo Di Tucci, Kenneth O'Brien, Michaela Blott, Marco D. Santambrogio	Architectural optimizations for high performance and energy efficient Smith-Waterman implementation on FPGAs using OpenCL.	DATE	2017	DBLP DOI BibTeX RDF
38	Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars	High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL.	BIBE	2017	DBLP DOI BibTeX RDF
38	Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Xuehai Zhou	Efficient Distributed Smith-Waterman Algorithm Based on Apache Spark.	CLOUD	2017	DBLP DOI BibTeX RDF
38	Simone Casale Brunet, Endri Bezati, Marco Mattavelli	Design space exploration of dataflow-based Smith-Waterman FPGA implementations.	SiPS	2017	DBLP DOI BibTeX RDF
38	Simone Casale Brunet, Endri Bezati, Marco Mattavelli	High level synthesis of Smith-Waterman dataflow implementations.	ICASSP	2017	DBLP DOI BibTeX RDF
38	Takahiro Nishimura, Jacir Luiz Bordim, Yasuaki Ito, Koji Nakano	Accelerating the Smith-Waterman Algorithm Using Bitwise Parallel Bulk Computation Technique on GPU.	IPDPS Workshops	2017	DBLP DOI BibTeX RDF
38	William B. Yates, Edward C. Keedwell	Clustering of hyper-heuristic selections using the Smith-Waterman algorithm for offline learning.	GECCO (Companion)	2017	DBLP DOI BibTeX RDF
38	Kazuki Yasui, Fumihiko Ino	Accelerating scoring computation of Smith-Waterman algorithm with mixed word length.	BIBM	2017	DBLP DOI BibTeX RDF
38	Karl Buhagiar, Owen Casha, Ivan Grech, Edward Gatt, Joseph Micallef	Hardware implementation of efficient path reconstruction for the Smith-Waterman algorithm.	CoDIT	2017	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías	First Experiences Accelerating Smith-Waterman on Intel's Knights Landing Processor.	ICA3PP	2017	DBLP DOI BibTeX RDF
38	Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón	Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis.	IWBBIO (2)	2017	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías	Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA.	IWBBIO (2)	2017	DBLP DOI BibTeX RDF
38	Dong-Hyeon Park, Jonathan Beaumont, Trevor N. Mudge	Accelerating Smith-Waterman Alignment Workload with Scalable Vector Computing.	CLUSTER	2017	DBLP DOI BibTeX RDF
38	Atef Ibrahim, Hamed Elsimary, Abdullah Aljumah	Novel Reconfigurable Hardware Accelerator for Protein Sequence Alignment Using Smith-Waterman Algorithm.	IEICE Trans. Fundam. Electron. Commun. Comput. Sci.	2016	DBLP DOI BibTeX RDF
38	Hurmat Ali Shah, Laiq Hasan, Insoo Koo	Optimized and Portable FPGA-Based Systolic Cell Architecture for Smith-Waterman-Based DNA Sequence Alignment.	J. Inform. and Commun. Convergence Engineering	2016	DBLP DOI BibTeX RDF
38	Sergio Gálvez, Adis Ferusic, Francisco José Esteban 0002, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado	Speeding-up Bioinformatics Algorithms with Heterogeneous Architectures: Highly Heterogeneous Smith-Waterman (HHeterSW).	J. Comput. Biol.	2016	DBLP DOI BibTeX RDF
38	B. Ashwini, Vijay Krishna Menon, K. P. Soman	Prediction of Malicious Domains Using Smith Waterman Algorithm.	SSCC	2016	DBLP DOI BibTeX RDF
38	Wael Abou El-Wafa, Asmaa G. Seliem, Hesham F. A. Hamed	Hardware Acceleration of Smith-Waterman Algorithm for Short Read DNA Alignment Using FPGA.	COMPSAC Workshops	2016	DBLP DOI BibTeX RDF
38	Vijay Naidu, Ajit Narayanan	Needleman-Wunsch and Smith-Waterman Algorithms for Identifying Viral Polymorphic Malware Variants.	DASC/PiCom/DataCom/CyberSciTech	2016	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías	An energy-aware performance analysis of SWIMM: Smith-Waterman implementation on Intel's Multicore and Manycore architectures.	Concurr. Comput. Pract. Exp.	2015	DBLP DOI BibTeX RDF
38	Daiki Okada, Fumihiko Ino, Kenichi Hagihara	Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
38	Xiaowen Feng, Hai Jin 0001, Ran Zheng, Lei Zhu 0002, Weiqi Dai	Accelerating Smith-Waterman Alignment of Species-Based Protein Sequences on GPU.	Int. J. Parallel Program.	2015	DBLP DOI BibTeX RDF
38	Heba Khaled, Hossam El Deen Mostafa Faheem, Rania El-Gohary	Design and implementation of a hybrid MPI-CUDA model for the Smith-Waterman algorithm.	Int. J. Data Min. Bioinform.	2015	DBLP DOI BibTeX RDF
38	Matthew B. Baker, Aaron Welch, Manjunath Gorentla Venkata	Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces.	OpenSHMEM	2015	DBLP DOI BibTeX RDF
38	Enzo Rucci, Carlos García 0001, Guillermo Botella Juan, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías	Smith-Waterman Protein Search with OpenCL on an FPGA.	TrustCom/BigDataSE/ISPA (3)	2015	DBLP DOI BibTeX RDF
38	Yongchao Liu, Bertil Schmidt	SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors.	CoRR	2014	DBLP BibTeX RDF
38	Juan M. Marmolejo-Tejada, Vladimir Trujillo-Olaya, Claudia Patricia Renteria-Mejia, Jaime Velasco-Medina	Hardware implementation of the Smith-Waterman algorithm using a systolic architecture.	LASCAS	2014	DBLP DOI BibTeX RDF
38	Jaime Seguel	Mathematics of the Design of a Parallel Mapping Assembly Algorithm - Combining Smith-Waterman and Hirschberg's LCS Methods.	BIOINFORMATICS	2014	DBLP DOI BibTeX RDF
38	Yongchao Liu, Bertil Schmidt	SWAPHI: Smith-waterman protein database search on Xeon Phi coprocessors.	ASAP	2014	DBLP DOI BibTeX RDF
38	Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni	Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization.	IWBBIO	2014	DBLP BibTeX RDF
38	Enzo Rucci, Armando De Giusti, Marcelo R. Naiouf, Guillermo Botella Juan, Carlos García 0001, Manuel Prieto-Matías	Smith-Waterman algorithm on heterogeneous systems: A case study.	CLUSTER	2014	DBLP DOI BibTeX RDF
38	Yongchao Liu, Tuan Tu Tran, Felix Lauenroth, Bertil Schmidt	SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi coprocessors for Long DNA Sequences.	CLUSTER	2014	DBLP DOI BibTeX RDF