Search results for "allostery"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
36	Dagmar Iber	The Mechanistic Basis of Compartmentalized Gene Expression in Bacillus subtilis.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	allostery, asymmetric cell division, cell differentiation, sporulation, mathematical model
27	Colin L. Welsh, Lalima K. Madan	Allostery in Protein Tyrosine Phosphatases is Enabled by Divergent Dynamics.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
27	Steve Agajanian, Mohammed Alshahrani, Fang Bai, Peng Tao 0001, Gennady M. Verkhivker	Exploring and Learning the Universe of Protein Allostery Using Artificial Intelligence Augmented Biophysical and Computational Approaches.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
27	Sian Xiao, Mohammed Alshahrani, Grace Gupta, Peng Tao 0001, Gennady Verkhivker	Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variant Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
27	Hatice Gokcan, Jirair K. Bedoyan, Olexandr Isayev	Simulations of Pathogenic E1α Variants: Allostery and Impact on Pyruvate Dehydrogenase Complex-E1 Structure and Function.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
27	Lei Chen, Weikang Gong, Zhongjie Han, Wenxue Zhou, Shuang Yang, Chunhua Li	Key Residues in δ Opioid Receptor Allostery Explored by the Elastic Network Model and the Complex Network Model Combined with the Perturbation Method.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
27	Qiaojing Huang, Luhua Lai, Zhirong Liu	Quantitative Analysis of Dynamic Allostery.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
27	Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, Keerthi Krishnan	Landscape-Based Protein Stability Analysis and Network Modeling of Multiple Conformational States of the SARS-CoV-2 Spike D614G Mutant: Conformational Plasticity and Frustration-Induced Allostery as Energetic Drivers of Highly Transmissible Spike Variants.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
27	Amanda L. Peiffer, Julie M. Garlick, Stephen T. Joy, Anna K. Mapp, Charles L. Brooks III	Allostery in the dynamic coactivator domain KIX occurs through minor conformational micro-states.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
27	Xingyue Guan, Cheng Tan 0004, Wenfei Li, Wei Wang 0159, D. Thirumalai	Role of water-bridged interactions in metal ion coupled protein allostery.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
27	Debayan Chakraborty, Mauro Lorenzo Mugnai, D. Thirumalai	On the Emergence of Orientational Order in Folded Proteins with Implications for Allostery.	Symmetry	2021	DBLP DOI BibTeX RDF
27	Ammu Prasanna Kumar, Chandra S. Verma 0001, Suryani Lukman	Structural dynamics and allostery of Rab proteins: strategies for drug discovery and design.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
27	Hongzhao Shao, Stephen Boulton, Cristina Olivieri, Hebatallah Mohamed, Madoka Akimoto, Manu Veliparambil Subrahmanian, Gianluigi Veglia, John L. Markley, Giuseppe Melacini, Woonghee Lee 0003	CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery.	Bioinform.	2021	DBLP DOI BibTeX RDF
27	Francesco Trozzi, Feng Wang, Gennady Verkhivker, Brian D. Zoltowski, Peng Tao 0001	Dimeric allostery mechanism of the plant circadian clock photoreceptor ZEITLUPE.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
27	Metin Yazar, Pemra Ozbek	Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy.	J. Comput. Aided Mol. Des.	2020	DBLP DOI BibTeX RDF
27	Paul Campitelli, S. Banu Ozkan	Allostery and Epistasis: Emergent Properties of Anisotropic Networks.	Entropy	2020	DBLP DOI BibTeX RDF
27	Weihua Mu, Shixin Ye	B-factor and Light-induced Allostery in NMDA Receptors.	UV	2020	DBLP DOI BibTeX RDF
27	Hamed S. Hayatshahi, Emilio Ahuactzin, Peng Tao 0001, Shouyi Wang, Jin Liu 0005	Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
27	Karolina Mikulska-Ruminska, Indira Shrivastava, James Krieger, She Zhang, Hongchun Li, Hülya Bayir, Sally E. Wenzel, Andrew P. Vandemark, Valerian E. Kagan, Ivet Bahar	Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
27	Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa	Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
27	Alvaro Alfayate, Carlos Rodriguez Caceres, Helena G. Dos Santos, Ugo Bastolla	Predicted dynamical couplings of protein residues characterize catalysis, transport and allostery.	Bioinform.	2019	DBLP DOI BibTeX RDF
27	Russell B. Davidson, Josie Hendrix, Brian J. Geiss, Martin McCullagh	Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations.	PLoS Comput. Biol.	2018	DBLP DOI BibTeX RDF
27	Yina Gu, Da-Wei Li, Rafael Brüschweiler	Statistical database analysis of the role of loop dynamics for protein-protein complex formation and allostery.	Bioinform.	2017	DBLP DOI BibTeX RDF
27	Michal Bassani-Sternberg, Chloé Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller	Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
27	Aysima Hacisuleyman, Burak Erman	Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
27	Samuel Hertig, Naomi R. Latorraca, Ron O. Dror	Revealing Atomic-Level Mechanisms of Protein Allostery with Molecular Dynamics Simulations.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
27	Nikita Chopra, Thomas E. Wales, Raji E. Joseph, Scott E. Boyken, John R. Engen, Robert L. Jernigan, Amy H. Andreotti	Dynamic Allostery Mediated by a Conserved Tryptophan in the Tec Family Kinases.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
27	Sarina Grutsch, Sven Brüschweiler, Martin Tollinger	NMR Methods to Study Dynamic Allostery.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
27	Robert Kalescky, Hongyu Zhou, Jin Liu 0005, Peng Tao 0001	Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
27	Jin Liu 0005, Ruth Nussinov	Allostery: An Overview of Its History, Concepts, Methods, and Applications.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
27	Laleh Soltan Ghoraie, Forbes J. Burkowski, Mu Zhu	Using kernelized partial canonical correlation analysis to study directly coupled side chains and allostery in small G proteins.	Bioinform.	2015	DBLP DOI BibTeX RDF
27	Michael V. LeVine, Harel Weinstein	AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems.	Entropy	2015	DBLP DOI BibTeX RDF
27	Maxime Louet, Christian Seifert, Ulf Hensen, Frauke Gräter	Dynamic Allostery of the Catabolite Activator Protein Revealed by Interatomic Forces.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
27	Felipe Merino, Benjamin Bouvier, Vlad Cojocaru	Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
27	Chung-Jung Tsai, Ruth Nussinov	A Unified View of "How Allostery Works".	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
27	Ignacio J. General, Ying Liu, Mandy E. Blackburn, Wenzhi Mao, Lila M. Gierasch, Ivet Bahar	ATPase Subdomain IA Is a Mediator of Interdomain Allostery in Hsp70 Molecular Chaperones.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
27	Peter Man-Un Ung, Andrea D. Thompson, Lyra Chang, Jason E. Gestwicki, Heather A. Carlson	Identification of Key Hinge Residues Important for Nucleotide-Dependent Allostery in E. coli Hsp70/DnaK.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
27	Enrique Marcos, Ramon Crehuet, Ivet Bahar	Changes in Dynamics upon Oligomerization Regulate Substrate Binding and Allostery in Amino Acid Kinase Family Members.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
27	Wolfram Stacklies, Fei Xia, Frauke Gräter	Dynamic Allostery in the Methionine Repressor Revealed by Force Distribution Analysis.	PLoS Comput. Biol.	2009	DBLP DOI BibTeX RDF
27	Yasunobu Seno	Allostery of the two-state model of hemoglobin studied by ECEPP energy minimization.	J. Comput. Chem.	2006	DBLP DOI BibTeX RDF
27	Rafael Franco, E. I. Canela	Computer-based learning of cooperativity and allostery.	Comput. Appl. Biosci.	1985	DBLP DOI BibTeX RDF