Search results for "archaea"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
49	Dieter Oesterhelt	Systems Biology of Halophilic Archaea.	CMSB	2008	DBLP DOI BibTeX RDF
44	Minghui Wu 0001, Xian Chen, Fanwei Zhu, Jing Ying	An Improved Algorithm on Detecting Transcription and Translation Motif in Archaeal Genomic Sequences.	LSMS (2)	2007	DBLP DOI BibTeX RDF
33	Mary V. Schorn	A unique insight into department of energy research accomplishments: a special collection.	JCDL	2008	DBLP DOI BibTeX RDF	accomplishments, achievements, aec, archaea, atomic energy commission, bubble chamber, buckyball, cancer therapy, computerized axial tomography, cosmic microwave background radiation, cyclotron, department of energy, energy research and development administration, erda, feynman diagrams, government documents, human genome, manhattan project, mri, neutron scattering, nobel prize, nuclear shell model, radioisotope thermoelectric generators, rtg, special collection, success stories, superconductivity, top quark, magnetic resonance imaging, atom, video game, research, history, discoveries, dna, science, positron emission tomography, results, cat, outcomes, solar energy, pet, economic impacts, doe
33	Zasha Weinberg, Walter L. Ruzzo	Faster genome annotation of non-coding RNA families without loss of accuracy.	RECOMB	2004	DBLP DOI BibTeX RDF	covariance models, gene families, genome annotation, histone downstream element, hyperthermophile archaea snoRNA, iron response element, rigorous filter, profile hidden Markov models, non-coding RNA
27	Haiqing Zhao, Hao Wu, Alex Guseman, Dulith Abeykoon, Christina M. Camara, Yamini Dalal, David Fushman, Garegin A. Papoian	The role of cryptic ancestral symmetry in histone folding mechanisms across Eukarya and Archaea.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
27	Massimo Di Giulio	The absence of the evolutionary state of the Prokaryote would imply a polyphyletic origin of proteins and that LUCA, the ancestor of bacteria and that of archaea were progenotes.	Biosyst.	2023	DBLP DOI BibTeX RDF
27	Andrés Cumsille, Roberto E. Durán, Andrea Rodríguez-Delherbe, Vicente Saona-Urmeneta, Beatriz Cámara, Michael Seeger, Mauricio Araya, Nicolás A. Jara, Carlos Buil-Aranda	GenoVi, an open-source automated circular genome visualizer for bacteria and archaea.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
27	Felipe Hernandes Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert A. Edwards, Francisco Rodríguez-Valera	RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.	Patterns	2021	DBLP DOI BibTeX RDF
27	Alexander V. Pinevich	The ambiguity of the basic terms related to eukaryotes and the more consistent etymology based on eukaryotic signatures in Asgard archaea.	Biosyst.	2020	DBLP DOI BibTeX RDF
27	Massimo Di Giulio	LUCA as well as the ancestors of archaea, bacteria and eukaryotes were progenotes: Inference from the distribution and diversity of the reading mechanism of the AUA and AUG codons in the domains of life.	Biosyst.	2020	DBLP DOI BibTeX RDF
27	Massimo Di Giulio	The phylogenetic distribution of the glutaminyl-tRNA synthetase and Glu-tRNAGln amidotransferase in the fundamental lineages would imply that the ancestor of archaea, that of eukaryotes and LUCA were progenotes.	Biosyst.	2020	DBLP DOI BibTeX RDF
27	Agata Gryta, Magdalena Frac	Methodological Aspects of Multiplex Terminal Restriction Fragment Length Polymorphism-Technique to Describe the Genetic Diversity of Soil Bacteria, Archaea and Fungi.	Sensors	2020	DBLP DOI BibTeX RDF
27	Zhongjie Tang, ShaoQi Chen, Ang Chen, Bifang He, Yuwei Zhou, Guoshi Chai, Feng-Biao Guo, Jian Huang 0004	CasPDB: an integrated and annotated database for Cas proteins from bacteria and archaea.	Database J. Biol. Databases Curation	2019	DBLP DOI BibTeX RDF
27	Vikram Alva, Andrei N. Lupas	Histones predate the split between bacteria and archaea.	Bioinform.	2019	DBLP DOI BibTeX RDF
27	Shengqin Wang, Zhihong Zheng, Huixi Zou, Nan Li, Mingjiang Wu	Characterization of the secondary metabolite biosynthetic gene clusters in archaea.	Comput. Biol. Chem.	2019	DBLP DOI BibTeX RDF
27	Nenad S. Mitic, Sasa N. Malkov, Jovana J. Kovacevic, Gordana Pavlovic-Lazetic, Milos V. Beljanski	Structural disorder of plasmid-encoded proteins in Bacteria and Archaea.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
27	Luis Miguel Rodriguez-Rojas, Santosh Gunturu, William T. Harvey, Ramon Rosselló-Mora, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis	The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.	Nucleic Acids Res.	2018	DBLP DOI BibTeX RDF
27	Mirna Moukhtar, Wafi Chaar, Ziad Abdel-Razzak, Mohamad Khalil, Samir Taha, Hala Chamieh	ARCPHdb: A comprehensive protein database for SF1 and SF2 helicase from archaea.	Comput. Biol. Medicine	2017	DBLP DOI BibTeX RDF
27	Lebin Thomas, Hari Ram, Ved Pal Singh	Evolutionary Relationships and Taxa-Specific Conserved Signature Indels Among Cellulases of Archaea, Bacteria, and Eukarya.	J. Comput. Biol.	2017	DBLP DOI BibTeX RDF
27	Omer S. Alkhnbashi	Computational characterisation of genomic CRISPR-Cas systems in archaea and bacteria		2017	RDF
27	Michael A. Peabody, Matthew R. Laird, Caitlyn Vlasschaert, Raymond Lo, Fiona S. L. Brinkman	PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures.	Nucleic Acids Res.	2016	DBLP DOI BibTeX RDF
27	Marcus Ulbrich	Metabolische Modelle - Aber ohne phylogenetischem Trugschluss! Die Problematik und Optimierung der Funktionsvorhersage von Enzymen und der Erstellung metabolischer Modelle auf Grundlage der Phylogenie am Beispiel der Rhodobacteraceen und Archaeen. (Metabolic models - But without phylogenetical fallacy! The issue and the optimisation of the functional prediction of enzymes and the reconstruction of metabolic models based on phylogeny considering the example of Rhodobacteraceae and archaea.) (PDF / PS)		2016	DOI RDF
27	David M. Kristensen, Usman Saeed, Dmitrij Frishman, Eugene V. Koonin	A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
27	Steven F. Stoddard, Byron J. Smith, Robert Hein, Benjamin R. K. Roller, Thomas M. Schmidt	rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
27	Mohamed Amine Zorgani, Kevin Patron, Mickaël Desvaux	New insight in the structural features of haloadaptation in α-amylases from halophilic Archaea following homology modeling strategy: folded and stable conformation maintained through low hydrophobicity and highly negative charged surface.	J. Comput. Aided Mol. Des.	2014	DBLP DOI BibTeX RDF
27	Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler	Comparative Detection of Processed Small RNAs in Archaea.	IWBBIO	2014	DBLP BibTeX RDF
27	Tobias Warnecke, Erin A. Becker, Marc T. Facciotti, Corey Nislow, Ben Lehner	Conserved Substitution Patterns around Nucleosome Footprints in Eukaryotes and Archaea Derive from Frequent Nucleosome Repositioning through Evolution.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
27	Carlo Cattani	On the Existence of Wavelet Symmetries in Archaea DNA.	Comput. Math. Methods Medicine	2012	DBLP DOI BibTeX RDF
27	K. R. S. Sambasiva Rao, D. Srinivasa Rao	A comparative-based phylogenetic study in the evolution of 16S rRNA and rad a genes in Archaea.	Int. J. Data Min. Bioinform.	2012	DBLP DOI BibTeX RDF
27	Roy Eric Collins, Hugh Merz, Paul G. Higgs	Origin and evolution of gene families in Bacteria and Archaea.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
27	Nancy Y. Yu, Matthew R. Laird, Cory Spencer, Fiona S. L. Brinkman	PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
27	Yucheng Shao, Ewan M. Harrison, Dexi Bi, Cui Tai, Xinyi He, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng	TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
27	Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Pérez-Rueda	New insights on gene regulation in archaea.	Comput. Biol. Chem.	2011	DBLP DOI BibTeX RDF
27	Feng-Jie Sun, Gustavo Caetano-Anollés	The ancient history of the structure of ribonuclease P and the early origins of Archaea.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
27	Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky	Archaic chaos: intrinsically disordered proteins in Archaea.	BMC Syst. Biol.	2010	DBLP DOI BibTeX RDF
27	Zarraz May-Ping Lee, Carl Bussema III, Thomas M. Schmidt	rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
27	Feng-Jie Sun, Gustavo Caetano-Anollés	Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses.	PLoS Comput. Biol.	2008	DBLP DOI BibTeX RDF
27	Kira S. Makarova, Nick V. Grishin, Eugene V. Koonin	The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria.	Bioinform.	2006	DBLP DOI BibTeX RDF
27	Manuel Martínez-Bueno, Antonio J. Molina-Henares, Eduardo Pareja, Juan L. Ramos, Raquel Tobes	BacTregulators: a database of transcriptional regulators in bacteria and archaea.	Bioinform.	2004	DBLP DOI BibTeX RDF
27	Hagay Shmuely, E. Dinitz, Irit Dahan, Jerry Eichler, D. Fischer, Boaz Shaanan	Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.	Bioinform.	2004	DBLP DOI BibTeX RDF
27	Ernesto Pérez-Rueda, Julio Collado-Vides, Lorenzo Segovia	Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea.	Comput. Biol. Chem.	2004	DBLP DOI BibTeX RDF
27	Mark Gerstein	[Invited Lecture] A Structural Census of Genomes: Comparing Bacterial, Eukaryotic, and Archaea Genomes in Terms of Protein Structure.	German Conference on Bioinformatics	1998	DBLP BibTeX RDF
27	Masahiro Kamekura, Yukio Seno	Nucleotide sequences of 16S rRNA encoding genes from halophilic archaea Halococcus morrhuae NRC16008 and Haloferax mediterranei ATCC33500.	Nucleic Acids Res.	1992	DBLP DOI BibTeX RDF
22	Tomasz Arodz	Conservation of Edge Essentiality Profiles in Metabolic Networks Across Species.	Complex (2)	2009	DBLP DOI BibTeX RDF	edge essentiality, clustering of organisms, Complex networks, metabolic networks
22	Jean-Louis Lassez, Ryan A. Rossi, Axel E. Bernal	Crick's Hypothesis Revisited: The Existence of a Universal Coding Frame.	AINA Workshops (1)	2007	DBLP DOI BibTeX RDF
22	Alexander L. Tatuzov, Alexis A. Tatuzov	Neural Network Modeling of Species Evolution: Loss and Gain in Complete Genome.	IJCNN	2006	DBLP DOI BibTeX RDF
22	Osamu Maruyama, Akiko Matsuda, Satoru Kuhara	Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
22	Russell F. Doolittle	Fifty years of sequence analysis: what have we learned?	RECOMB	2004	DBLP DOI BibTeX RDF
22	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood.	Euro-Par	2004	DBLP DOI BibTeX RDF
22	Shoko Miyake, Yoichi Takenaka, Hideo Matsuda	A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile.	CSB	2004	DBLP DOI BibTeX RDF
22	Antonio Neme, Pedro Miramontes	Biological Domain Identification Based in Codon Usage by Means of Rule and Tree Induction.	CMSB	2004	DBLP DOI BibTeX RDF
22	Dieter Oesterhelt	Biology and bioinformatics of halophilism.	RECOMB	2003	DBLP DOI BibTeX RDF