Search results for "biosequence"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
74	Praveen Krishnamurthy, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Kwame Gyang, Arpith C. Jacob, Joseph M. Lancaster	Biosequence Similarity Search on the Mercury System.	J. VLSI Signal Process.	2007	DBLP DOI BibTeX RDF	comparative annotation, biosequence, DNA sequencing
65	Jeremy Buhler	Provably sensitive Indexing strategies for biosequence similarity search.	RECOMB	2002	DBLP DOI BibTeX RDF
65	Edgar E. Vallejo, Fernando Ramos	Evolving Turing Machines for Biosequence Recognition and Analysis.	EuroGP	2001	DBLP DOI BibTeX RDF
54	Fei Xia, Yong Dou	Reducing Storage Requirements in Accelerating Algorithm of Global BioSequence Alignment on FPGA.	APPT	2007	DBLP DOI BibTeX RDF	Global BioSequence Alignment, Needleman-Wunsch algorithm, FPGA, Bioinformatics, Hardware Accelerator
48	Robert Giegerich, Peter Steffen	Challenges in the compilation of a domain specific language for dynamic programming.	SAC	2006	DBLP DOI BibTeX RDF	biosequence analysis, dynamic programming, domain specific languages
46	Yen Kaow Ng, Takeshi Shinohara	Finding Consensus Patterns in Very Scarce Biosequence Samples from Their Minimal Multiple Generalizations.	PAKDD	2006	DBLP DOI BibTeX RDF
46	Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Achutavarrier Prasad Vinod	A reconfigurable architecture for scanning biosequence databases.	ISCAS (5)	2005	DBLP DOI BibTeX RDF
46	Timothy F. Oliver, Bertil Schmidt	High Performance Biosequence Database Scanning on Reconfigurable Platforms.	IPDPS	2004	DBLP DOI BibTeX RDF
46	Praveen Krishnamurthy, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Kwame Gyang, Joseph M. Lancaster	Biosequence Similarity Search on the Mercury System.	ASAP	2004	DBLP DOI BibTeX RDF
46	Gill Bejerano	Efficient exact value computation and applications to biosequence analysis.	RECOMB	2003	DBLP DOI BibTeX RDF	p-value, exact test, frequency tables, real extension, branch and bound, categorical data
46	Ozgur Ozturk, Hakan Ferhatosmanoglu	Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases.	BIBE	2003	DBLP DOI BibTeX RDF
46	Melissa Lemos, Luiz Fernando Bessa Seibel, Marco A. Casanova	BioNotes: A System for Biosequence Annotation.	DEXA Workshops	2003	DBLP DOI BibTeX RDF
46	Praveen R. Thiagarajan, Guang R. Gao	Visualizing Biosequence Data Using Texture Mapping.	INFOVIS	2002	DBLP DOI BibTeX RDF
28	Yanni Sun, Jeremy Buhler	Designing multiple simultaneous seeds for DNA similarity search.	RECOMB	2004	DBLP DOI BibTeX RDF	Mandala, biosequence comparison, genomic DNA, seed design, similarity search
28	Jeremy Buhler, Uri Keich, Yanni Sun	Designing seeds for similarity search in genomic DNA.	RECOMB	2003	DBLP DOI BibTeX RDF	Mandala, biosequence comparison, genomic DNA, seed design, similarity search
26	Chris Salahub, Jeffrey Uhlmann	Optimal Structured Matrix Approximation for Robustness to Incomplete Biosequence Data.	CoRR	2023	DBLP DOI BibTeX RDF
26	Shamika Ganesan, S. Sachin Kumar, K. P. Soman	Deep Learning Based NLP Embedding Approach for Biosequence Classification.	MIKE	2021	DBLP DOI BibTeX RDF
26	Uddalak Mitra, Balaram Bhattacharyya, Tathagato Mukhopadhyay	PEER: A direct method for biosequence pattern mining through waits of optimal k-mers.	Inf. Sci.	2020	DBLP DOI BibTeX RDF
26	Jona Thai, Michael Grüninger	A BioSequence Ontology from Molecular Structure.	ICBO/ODLS	2020	DBLP BibTeX RDF
26	Gregory Kucherov	Evolution of biosequence search algorithms: a brief survey.	Bioinform.	2019	DBLP DOI BibTeX RDF
26	Vijay Naidu, Manoranjan Mohanty	Defeating Fake Food Labels Using Watermarking and Biosequence Analysis.	TrustCom/BigDataSE	2019	DBLP DOI BibTeX RDF
26	Guinevere Sieradzki, Sabrina Mierswa, Jung Lee	Application of Comparative Biosequence Analysis to Understand Antibiotic Resistance in Superbug.	BCB	2019	DBLP DOI BibTeX RDF
26	Malik Ashter Mehdy, Aleandro Antidormi, Mariagrazia Graziano, Gianluca Piccinini	Nanoarrays for Systolic Biosequence Analysis.	J. Circuits Syst. Comput.	2018	DBLP DOI BibTeX RDF
26	Wei Zhou 0011, Ling Liu 0001, Calton Pu, Tao Zhu, Qingyang Wang 0001, Wenkun Xiang, Shaowen Yao 0001	An Experimental Study of a Biosequence Big Data Analysis Service.	ICWS	2017	DBLP DOI BibTeX RDF
26	Christopher S. Oehmen, Elena S. Peterson, Aaron R. Phillips, Darren S. Curtis	A Biosequence-Based Approach to Software Characterization.	IEEE Symposium on Security and Privacy Workshops	2016	DBLP DOI BibTeX RDF
26	Boris Brimkov	Geometric approach to string analysis for biosequence classification.	J. Integr. Bioinform.	2014	DBLP DOI BibTeX RDF
26	Robert Hochberg, Treena Larrew Milam	Data Structures for Parsimony Correlation and Biosequence Co-Evolution.	J. Comput. Biol.	2014	DBLP DOI BibTeX RDF
26	Boris Brimkov, Valentin E. Brimkov	Geometric Approach to Biosequence Analysis.	PACBB	2014	DBLP DOI BibTeX RDF
26	Mariagrazia Graziano, Stefano Frache, Maurizio Zamboni	A Hardware Viewpoint on Biosequence Analysis: What's Next?	ACM J. Emerg. Technol. Comput. Syst.	2013	DBLP DOI BibTeX RDF
26	Pradeep Sinha, Goldi Misra, Deepu Vikranman, Abhishek Das, Shraddha Desai, Sucheta Pawar, Kalyani Shewale	Biosequence Analysis Using Intel® Xeon Phi.	EMS	2013	DBLP DOI BibTeX RDF
26	Xiaochun Yang 0001, Honglei Liu, Bin Wang 0015	ALAE: Accelerating Local Alignment with Affine Gap Exactly in Biosequence Databases	CoRR	2012	DBLP BibTeX RDF
26	Xiaochun Yang 0001, Honglei Liu, Bin Wang 0015	ALAE: Accelerating Local Alignment with Affine Gap Exactly in Biosequence Databases. (PDF / PS)	Proc. VLDB Endow.	2012	DBLP DOI BibTeX RDF
26	Saritha Namboodiri, Chandra Verma, Pawan K. Dhar, Alessandro Giuliani, Achuthsankar S. Nair	Application of Recurrence Quantification Analysis (RQA) in Biosequence Pattern Recognition.	ACC (1)	2011	DBLP DOI BibTeX RDF
26	Haihang You, Bhanu Rekapalli, Qing Liu, Shirley Moore	Autotuned parallel I/O for highly scalable biosequence analysis.	TG	2011	DBLP DOI BibTeX RDF
26	Stefano Frache, Luca Gaetano Amarù, Mariagrazia Graziano, Maurizio Zamboni	Nanofabric power analysis: Biosequence alignment case study.	NANOARCH	2011	DBLP DOI BibTeX RDF
26	Marco Aldinucci, Marco Danelutto, Massimiliano Meneghin, Massimo Torquati, Peter Kilpatrick	Efficient streaming applications on multi-core with FastFlow: the biosequence alignment test-bed.	PARCO	2009	DBLP DOI BibTeX RDF
26	Luis de la Torre, Jaime Seguel	A Parallel Biosequence Motif Discoverer Based on Dynamic Programming and Adaptive Scheduling.	CSC	2009	DBLP BibTeX RDF
26	Ole Torp Lassen	Biosequence Analysis in PRISM.	ICLP	2008	DBLP DOI BibTeX RDF
26	Xiandong Meng, Vipin Chaudhary	An adaptive data prefetching scheme for biosequence database search on reconfigurable platforms.	SAC	2007	DBLP DOI BibTeX RDF	FPGA, data prefetching, DMA, Smith-Waterman algorithm
26	Khaled Benkrid, Ying Liu 0003, Abdsamad Benkrid	High Performance Biosequence Database Scanning using FPGAs.	ICASSP (1)	2007	DBLP DOI BibTeX RDF
26	Arpith C. Jacob, Brandon Harris, Jeremy Buhler, Roger D. Chamberlain, Young H. Cho	Scalable Softcore Vector Processor for Biosequence Applications.	FCCM	2006	DBLP DOI BibTeX RDF
26	Janina Reeder, Peter Steffen, Robert Giegerich	Effective ambiguity checking in biosequence analysis.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
26	Ozgur Ozturk, Hakan Ferhatosmanoglu	Vector Space Indexing for Biosequence Similarity Searches.	Int. J. Artif. Intell. Tools	2005	DBLP DOI BibTeX RDF
26	Gerd Pfeiffer, Heinz Kreft, Manfred Schimmler	Hardware Enhanced Biosequence Alignment.	METMBS	2005	DBLP BibTeX RDF
26	Daniel P. Miranker, Willard J. Briggs, Rui Mao 0001, Shulin Ni, Weijia Xu	Biosequence Use Cases in MoBIoS SQL.	IEEE Data Eng. Bull.	2004	DBLP BibTeX RDF
26	Adam C. Siepel, David Haussler	Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis.	J. Comput. Biol.	2004	DBLP DOI BibTeX RDF
26	Peter A. Spiro, Natasa Macura	A Local Alignment Metric for Accelerating Biosequence Database Search.	J. Comput. Biol.	2004	DBLP DOI BibTeX RDF
26	Melissa Lemos, Marco A. Casanova, Luiz Fernando Bessa Seibel, José Antônio Fernandes de Macêdo, Antonio Basílio de Miranda	Ontology-Driven Workflow Management for Biosequence Processing Systems.	DEXA	2004	DBLP DOI BibTeX RDF
26	Jeremy Buhler	Provably Sensitive Indexing Strategies for Biosequence Similarity Search.	J. Comput. Biol.	2003	DBLP DOI BibTeX RDF
26	Adam C. Siepel, David Haussler	Combining phylogenetic and hidden Markov models in biosequence analysis.	RECOMB	2003	DBLP DOI BibTeX RDF	context-sensitive substitution, maximum likelihood
26	Gill Bejerano	Automata learning and stocahstic modeling for biosequence analysis (למידת אוטומטים ומידול סטוכסטי לצרכי ניתוח רצפי מולקולות ביולוגיות.).		2003	RDF
26	Kim Laurio, Fredrik Linåker, Ajit Narayanan	Regular biosequence pattern matching with cellular automata.	Inf. Sci.	2002	DBLP DOI BibTeX RDF
26	Bertil Schmidt, Heiko Schröder 0001, Manfred Schimmler	Scanning Biosequence Databases on a Hybrid Parallel Architecture.	Euro-Par	2001	DBLP DOI BibTeX RDF
26	Raj K. Singh, D. L. Hoffman, Stephen G. Tell, C. Thomas White	BioSCAN: a network sharable computational resource for searching biosequence databases.	Comput. Appl. Biosci.	1996	DBLP DOI BibTeX RDF
26	C. Thomas White, Raj K. Singh, Peter B. Reintjes, Jordan Lampe, Bruce W. Erickson, Wayne D. Dettloff, Vernon L. Chi, Stephen F. Altschul	BioSCAN: A VLSI-Based System for Biosequence Analysis.	ICCD	1991	DBLP DOI BibTeX RDF
20	Alberto Apostolico, Fabio Cunial, Vineith Kaul	Table Compression by Record Intersections.	DCC	2008	DBLP DOI BibTeX RDF	table compression, saturated record, intrecord
20	Alberto Apostolico, Claudia Tagliacollo	Incremental Discovery of Irredundant Motif Bases in Time O(\|Sigma\| n2 log n).	WABI	2007	DBLP DOI BibTeX RDF
20	Janina Reeder, Robert Giegerich	A graphical programming system for molecular motif search.	GPCE	2006	DBLP DOI BibTeX RDF	dynamic programming, RNA structure
20	Kim R. Rasmussen, Jens Stoye, Eugene W. Myers	Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length.	RECOMB	2005	DBLP DOI BibTeX RDF
20	Cyril Allauzen, Mehryar Mohri, Brian Roark	A General Weighted Grammar Library.	CIAA	2004	DBLP DOI BibTeX RDF
20	Andrea Elaina Grimes, Robert P. Futrelle	Text Pattern Visualization for analysis of biology full text and captions.	CSB	2003	DBLP DOI BibTeX RDF
20	Robert Giegerich, Carsten Meyer	Algebraic Dynamic Programming.	AMAST	2002	DBLP DOI BibTeX RDF
20	Bertil Schmidt, Heiko Schröder 0001, Manfred Schimmler	Protein Sequence Comparison on the Instruction Systolic Array.	PaCT	2001	DBLP DOI BibTeX RDF
20	Yuh-Jyh Hu	Analyzing gene behaviors with genetic computation.	KES	2000	DBLP DOI BibTeX RDF