Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
109 | Lucian Ilie, Roberto Solis-Oba |
Gene Assembly Algorithms for Ciliates. |
DNA |
2006 |
DBLP DOI BibTeX RDF |
stichotrichs, gene assembly, dlad-first greedy strategy, algorithm, ciliates |
81 | Grzegorz Rozenberg |
Theory Inspired by Gene Assembly in Ciliates. |
CIAA |
2006 |
DBLP DOI BibTeX RDF |
|
62 | Liliana Cojocaru |
Simulating the Process of Gene Assembly in Ciliates. |
CIAA |
2004 |
DBLP DOI BibTeX RDF |
|
62 | Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg |
Characterizing the Micronuclear Gene Patterns in Ciliates. |
Theory Comput. Syst. |
2002 |
DBLP DOI BibTeX RDF |
|
62 | Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg |
Patterns of Micronuclear Genes in ciliates. |
DNA |
2001 |
DBLP DOI BibTeX RDF |
|
56 | Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg |
Parallelism in Gene Assembly. |
Nat. Comput. |
2006 |
DBLP DOI BibTeX RDF |
|
53 | Tero Harju, Chang Li, Ion Petre |
Parallel complexity of signed graphs for gene assembly in ciliates. |
Soft Comput. |
2008 |
DBLP DOI BibTeX RDF |
Gene assembly, Complexity, Parallelism, Graph model, Ciliates |
47 | Artiom Alhazov, Ion Petre, Vladimir Rogojin |
Solutions to computational problems through gene assembly. |
Nat. Comput. |
2008 |
DBLP DOI BibTeX RDF |
Stichotrichous, Gene assembly, Intramolecular model, Ciliate-based computing, DNA computing, Hamiltonian path problem, Ciliates |
47 | Michael Domaratzki |
Equivalence in template-guided recombination. |
Nat. Comput. |
2008 |
DBLP DOI BibTeX RDF |
Template-guided recombination, DNA recombination, Equivalence, Ciliates |
44 | Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates. |
FCT |
2007 |
DBLP DOI BibTeX RDF |
|
44 | Mark Daley, Ian McQuillan |
Useful Templates and Iterated Template-Guided DNA Recombination in Ciliates. |
Theory Comput. Syst. |
2006 |
DBLP DOI BibTeX RDF |
|
44 | Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus |
Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph. |
CompLife |
2006 |
DBLP DOI BibTeX RDF |
|
44 | Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
The Breakpoint Graph in Ciliates. |
CompLife |
2005 |
DBLP DOI BibTeX RDF |
|
44 | Tero Harju, Ion Petre, Grzegorz Rozenberg |
Two Models for Gene Assembly in Ciliates. |
Theory Is Forever |
2004 |
DBLP DOI BibTeX RDF |
|
44 | Tero Harju, Grzegorz Rozenberg |
Computational Processes in Living Cells: Gene Assembly in Ciliates. |
Developments in Language Theory |
2002 |
DBLP DOI BibTeX RDF |
|
37 | Michael Domaratzki |
Formal Language Tools for Template-Guided DNA Recombination. |
LATA |
2008 |
DBLP DOI BibTeX RDF |
|
37 | Artiom Alhazov, Ion Petre, Vladimir Rogojin |
Solutions to Computational Problems Through Gene Assembly. |
DNA |
2007 |
DBLP DOI BibTeX RDF |
|
37 | Jürgen Dassow, György Vaszil |
Ciliate Bio-operations on Finite String Multisets. |
Developments in Language Theory |
2006 |
DBLP DOI BibTeX RDF |
|
37 | Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg |
Complexity Measures for Gene Assembly. |
KDECB |
2006 |
DBLP DOI BibTeX RDF |
|
37 | Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg |
Parallelism in Gene Assembly. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
28 | Liliana Cojocaru |
Watson-Crick automata and PCFAS with two components: a computational power analogy. |
Conf. Computing Frontiers |
2004 |
DBLP DOI BibTeX RDF |
Szilard languages, Watson-Crick automata, gene assembly, parallel communicating finite automata systems, parallel communicating finite transducer systems, theory of computation, formal language theory, DNA molecule, ciliates |
25 | Brandon K. B. Seah, Estienne C. Swart |
BleTIES: annotation of natural genome editing in ciliates using long read sequencing. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Ganbat Ganbaatar, Khuder Altangerel, Tseren-Onolt Ishdorj |
Solving NP Hard Problems in the Framework of Gene Assembly in Ciliates. |
BIC-TA (1) |
2018 |
DBLP DOI BibTeX RDF |
|
25 | Nazifa Azam Khan, Ian McQuillan |
Descrambling Order Analysis in Ciliates. |
UCNC |
2017 |
DBLP DOI BibTeX RDF |
|
25 | Vladimir Rogojin, Ion Petre |
The Structure of Elementary Strategies for Gene Assembly in Ciliates. |
Fundam. Informaticae |
2015 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder |
Recombination faults in gene assembly in ciliates modeled using multimatroids. |
Theor. Comput. Sci. |
2015 |
DBLP DOI BibTeX RDF |
|
25 | Meng-Tsung Lee, Jiang-Shiou Hwang, Chih-Yung Hsu, Yang-Chi Chang |
Combining a locomotion indicator and data mining to analyze the interactive patterns between copepods and ciliates. |
Ecol. Informatics |
2015 |
DBLP DOI BibTeX RDF |
|
25 | Md. Sowgat Ibne Mahmud, Ian McQuillan |
Simulation of the 2JLP Gene Assembly Process in Ciliates. |
UCNC |
2015 |
DBLP DOI BibTeX RDF |
|
25 | I. Petra, V. Rogojin |
Dependency Relations Between Elementary Intramolecular Operations in Gene Assembly in Ciliates. |
J. Autom. Lang. Comb. |
2014 |
DBLP DOI BibTeX RDF |
|
25 | Aaron David Goldman, Elizabeth M. Stein, John R. Bracht, Laura F. Landweber |
Programmed Genome Processing in Ciliates. |
Discrete and Topological Models in Molecular Biology |
2014 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
The Algebra of Gene Assembly in Ciliates. |
Discrete and Topological Models in Molecular Biology |
2014 |
DBLP DOI BibTeX RDF |
|
25 | Sepinoud Azimi, Ion Petre |
The Reduction Power of Simple Operations for Gene Assembly in Ciliates. |
Discrete Mathematics and Computer Science |
2014 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
Graph Polynomials Motivated by Gene Rearrangements in Ciliates. |
CiE |
2014 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Mark Daley, Tero Harju, Natasa Jonoska, Ion Petre, Grzegorz Rozenberg |
Computational Nature of Gene Assembly in Ciliates. |
Handbook of Natural Computing |
2012 |
DBLP DOI BibTeX RDF |
|
25 | Jacob Herlin, Anna Nelson, Marion Scheepers |
Can ciliates compute evolutionary distance? |
CoRR |
2012 |
DBLP BibTeX RDF |
|
25 | Kevin B. Clark |
Origins of learned reciprocity in solitary ciliates searching grouped 'courting' assurances at quantum efficiencies. |
Biosyst. |
2010 |
DBLP DOI BibTeX RDF |
|
25 | Sergey Verlan, Artiom Alhazov, Ion Petre |
A sequence-based analysis of the pointer distribution of stichotrichous ciliates. |
Biosyst. |
2010 |
DBLP DOI BibTeX RDF |
|
25 | Kevin B. Clark |
Bose-Einstein condensates form in heuristics learned by ciliates deciding to signal 'social' commitments. |
Biosyst. |
2010 |
DBLP DOI BibTeX RDF |
|
25 | Ion Petre, Grzegorz Rozenberg |
Gene assembly in Ciliates. |
Scholarpedia |
2010 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
Combining overlap and containment for gene assembly in ciliates. |
Theor. Comput. Sci. |
2010 |
DBLP DOI BibTeX RDF |
|
25 | Miika Langille, Ion Petre, Vladimir Rogojin |
Three models for gene assembly in ciliates: a comparison. |
Comput. Sci. J. Moldova |
2010 |
DBLP BibTeX RDF |
|
25 | Vladimir Rogojin |
On computational properties of gene assembly in ciliates. |
Comput. Sci. J. Moldova |
2010 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
Reduction Graphs from Overlap Graphs for Gene Assembly in Ciliates. |
Int. J. Found. Comput. Sci. |
2009 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
Reality-and-Desire in Ciliates. |
Algorithmic Bioprocesses |
2009 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
The fibers and range of reduction graphs in ciliates. |
Acta Informatica |
2008 |
DBLP DOI BibTeX RDF |
|
25 | Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg |
Patterns of simple gene assembly in ciliates. |
Discret. Appl. Math. |
2008 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus |
Strategies of loop recombination in ciliates. |
Discret. Appl. Math. |
2008 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
Extending the Overlap Graph for Gene Assembly in Ciliates. |
LATA |
2008 |
DBLP DOI BibTeX RDF |
|
25 | Miika Langille, Ion Petre, Vladimir Rogojin |
Three models for gene assembly in ciliates: a comparison. |
BIONETICS |
2008 |
DBLP DOI BibTeX RDF |
|
25 | Ion Petre |
Mathematics of gene assembly in ciliates (Abstract). |
AFL |
2008 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
The Fibers and Range of Reduction Graphs in Ciliates |
CoRR |
2007 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
Extending the Overlap Graph for Gene Assembly in Ciliates |
CoRR |
2007 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
How Overlap Determines the Macronuclear Genes in Ciliates |
CoRR |
2007 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom |
Characterizing Reduction Graphs for Gene Assembly in Ciliates. |
Developments in Language Theory |
2007 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
Reducibility of gene patterns in ciliates using the breakpoint graph. |
Theor. Comput. Sci. |
2006 |
DBLP DOI BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus |
Strategies of Loop Recombination in Ciliates |
CoRR |
2006 |
DBLP BibTeX RDF |
|
25 | Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg |
Reducibility of Gene Patterns in Ciliates using the Breakpoint Graph |
CoRR |
2006 |
DBLP BibTeX RDF |
|
25 | Ion Petre |
Invariants of Gene-Assembly in Stichotrichous Ciliates (Invarianten der Gen-Assemblierung in Ciliaten der Unterklasse Stichotrichia). |
it Inf. Technol. |
2006 |
DBLP DOI BibTeX RDF |
|
25 | Andre R. O. Cavalcanti, Laura F. Landweber |
Insights into a Biological Computer: Detangling Scrambled Genes in Ciliates. |
Nanotechnology: Science and Computation |
2006 |
DBLP DOI BibTeX RDF |
|
25 | Andre R. O. Cavalcanti, Thomas H. Clarke, Laura F. Landweber |
MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates. |
Nucleic Acids Res. |
2005 |
DBLP DOI BibTeX RDF |
|
25 | Andre R. O. Cavalcanti, Laura F. Landweber |
Gene Unscrambler for detangling scrambled genes in ciliates. |
Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
|
25 | Lila Kari, Laura F. Landweber |
Biocomputation in Ciliates. |
Cellular Computing |
2004 |
DBLP BibTeX RDF |
|
25 | Andrzej Ehrenfeucht, Tero Harju, Ion Petre, David M. Prescott, Grzegorz Rozenberg |
Formal systems for gene assembly in ciliates. |
Theor. Comput. Sci. |
2003 |
DBLP DOI BibTeX RDF |
|
25 | Tero Harju, Ion Petre, Grzegorz Rozenberg |
Gene Assembly in Ciliates Part I. Molecular Operations. |
Bull. EATCS |
2003 |
DBLP BibTeX RDF |
|
25 | Andrzej Ehrenfeucht, Ion Petre, David M. Prescott, Grzegorz Rozenberg |
String and Graph Reduction Systems for Gene Assembly in Ciliates. |
Math. Struct. Comput. Sci. |
2002 |
DBLP DOI BibTeX RDF |
|
25 | Rudolf Freund, Carlos Martín-Vide, Victor Mitrana |
On Some Operations on Strings Suggested by Gene Assembly in Ciliates. |
New Gener. Comput. |
2002 |
DBLP DOI BibTeX RDF |
|
25 | David M. Prescott, Grzegorz Rozenberg |
How ciliates manipulate their own DNA - A splendid example of natural computing. |
Nat. Comput. |
2002 |
DBLP DOI BibTeX RDF |
|
25 | David M. Prescott |
DNA Manipulations in Ciliates. |
Formal and Natural Computing |
2002 |
DBLP DOI BibTeX RDF |
|
25 | Tero Harju, Ion Petre, Grzegorz Rozenberg |
Tutorial on DNA Computing and Graph Transformation - Computational Nature of Gene Assembly in Ciliates. |
ICGT |
2002 |
DBLP DOI BibTeX RDF |
|
25 | Andrzej Ehrenfeucht, Ion Petre, David M. Prescott, Grzegorz Rozenberg |
Universal and simple operations for gene assembly in ciliates. |
Where Mathematics, Computer Science, Linguistics and Biology Meet |
2001 |
DBLP BibTeX RDF |
|
25 | Andrzej Ehrenfeucht, Ion Petre, David M. Prescott, Grzegorz Rozenberg |
Circularity and Other Invariants of Gene Assembly in Ciliates. |
Words, Semigroups, and Transductions |
2001 |
DBLP BibTeX RDF |
|
25 | Grzegorz Rozenberg |
DNA Processing in Ciliates - the Wonders of DNA Computing in vivo. |
UMC |
2000 |
DBLP BibTeX RDF |
|
25 | Grzegorz Rozenberg |
DNA Processing in Ciliates - A Computational Point of View (invited abstract). |
SPIRE |
2000 |
DBLP DOI BibTeX RDF |
|
25 | Grzegorz Rozenberg |
Gene Assembly in Ciliates: Computing by Folding. |
A Half-Century of Automata Theory |
2000 |
DBLP BibTeX RDF |
|
25 | Lila Kari, Jarkko Kari, Laura F. Landweber |
Reversible Molecular Computation in Ciliates. |
Jewels are Forever |
1999 |
DBLP BibTeX RDF |
|
19 | Mark Daley |
On the Processing Power of Protozoa. |
CiE |
2008 |
DBLP DOI BibTeX RDF |
|
19 | Robert Brijder, Miika Langille, Ion Petre |
A String-Based Model for Simple Gene Assembly. |
FCT |
2007 |
DBLP DOI BibTeX RDF |
|
19 | Mark Daley, Ian McQuillan |
On Computational Properties of Template-Guided DNA Recombination. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
19 | Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg |
Simple Operations for Gene Assembly. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
19 | Tero Harju, Ion Petre, Grzegorz Rozenberg |
Formal Properties of Gene Assembly: Equivalence Problem for Overlap Graphs. |
Aspects of Molecular Computing |
2004 |
DBLP DOI BibTeX RDF |
|
19 | Tero Harju, Ion Petre, Grzegorz Rozenberg |
Tutorial on DNA Computing and Graph Transformation. |
ICGT |
2004 |
DBLP DOI BibTeX RDF |
|
19 | Mark Daley, Lila Kari |
Some Properties of Ciliate Bio-operations. |
Developments in Language Theory |
2002 |
DBLP DOI BibTeX RDF |
|
19 | Lila Kari, Mark Daley, Greg Gloor, Rani Siromoney, Laura F. Landweber |
How to Compute with DNA. |
FSTTCS |
1999 |
DBLP DOI BibTeX RDF |
|