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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
Group by:
The graphs summarize 40 occurrences of 29 keywords
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Results
Found 194 publication records. Showing 194 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 71 | Susan L. Havre, Bobbie-Jo M. Webb-Robertson, Anuj R. Shah, Christian Posse, Banu Gopalan, Fred J. Brockman |
Bioinformatic Insights from Metagenomics through Visualization.  |
CSB  |
2005 |
DBLP DOI BibTeX RDF |
visualization, bioinformatics, categorical, metagenomics, nominal |
| 51 | Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, Elena Marchiori |
Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data. |
PRIB |
2009 |
DBLP DOI BibTeX RDF |
|
| 51 | Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Y. L. Chin |
Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. |
DTMBIO |
2009 |
DBLP DOI BibTeX RDF |
dna composition features, k-mer, modified chebychev distance, k-mean clustering, metagenomics, binning |
| 46 | Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li 0002, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman |
CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows. |
SERVICES |
2010 |
DBLP DOI BibTeX RDF |
collaboration, scientific workflows, provenance, metagenomics |
| 41 | Johannes Goll, Douglas B. Rusch, David M. Tanenbaum, Mathangi Thiagarajan, Kelvin Li, Barbara A. Methé, Shibu Yooseph |
METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomics. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 25 | Guylaine Poisson, Mahdi Belcaid, Anne Bergeron |
Comparative Genomics and Extensive Recombinations in Phage Communities. |
RECOMB-CG |
2009 |
DBLP DOI BibTeX RDF |
|
| 25 | Changjun Wu, Ananth Kalyanaraman |
An efficient parallel approach for identifying protein families in large-scale metagenomic data sets. |
SC |
2008 |
DBLP DOI BibTeX RDF |
|
| 25 | Mark Menor, Kyungim Baek, Mahdi Belcaid, Yannick Gingras, Guylaine Poisson |
Virus DNA-fragment classification using taxonomic hidden Markov model profiles. |
SAC |
2010 |
DBLP DOI BibTeX RDF |
machine learning, annotation, viruses, metagenomics |
| 25 | Steven D. Essinger, Gail L. Rosen |
The Effect of Sequence Error and Partial Training Data on BLAST Accuracy. |
BIBE |
2010 |
DBLP DOI BibTeX RDF |
Error Analysis, BLAST, Metagenomics |
| 25 | Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter |
A Statistical Framework for the Functional Analysis of Metagenomes. |
RECOMB |
2009 |
DBLP DOI BibTeX RDF |
function comparison, Lander-Waterman, functional analysis, metagenomics |
| 25 | Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford |
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. |
RECOMB |
2009 |
DBLP DOI BibTeX RDF |
Hierarchical Tree Decompositions, Variation of Information, OTUs, Clustering, Protein Interaction Networks, Metagenomics |
| 25 | Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen |
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads. |
RECOMB |
2008 |
DBLP DOI BibTeX RDF |
weighted PCA, DNA composition metrics, Genome Signatures, Feature Extraction, Metagenomics, Normalized Cut, Binning |
| 25 | Thomas Lingner, Peter Meinicke |
Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach. |
WABI |
2008 |
DBLP DOI BibTeX RDF |
Pfam, target set reduction, machine learning, large-scale, protein classification, multi-class, metagenomics, homology search, protein function prediction, multi-label |
| 25 | Nigel McCoy, Shaun Mahony, Aaron Golden |
Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques. |
GCCB |
2006 |
DBLP DOI BibTeX RDF |
MPI, HPC, Self Organising Map, Metagenomics |
| 21 | Chenrui Duan, Zelin Zang, Yongjie Xu, Hang He, Zihan Liu, Zijia Song, Ju-Sheng Zheng, Stan Z. Li |
FGBERT: Function-Driven Pre-trained Gene Language Model for Metagenomics. |
CoRR |
2024 |
DBLP DOI BibTeX RDF |
|
| 21 | Yang Shen, Jinlin Zhu, Zhaohong Deng, Wenwei Lu, Hongchao Wang |
EnsDeepDP: An Ensemble Deep Learning Approach for Disease Prediction Through Metagenomics. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 21 | Long-Hao Jia, Yingjian Wu, Yanqi Dong, Jingchao Chen, Wei-Hua Chen, Xing-Ming Zhao |
A survey on computational strategies for genome-resolved gut metagenomics. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 21 | Abhishek Khatri, Aman Thakur, Ayush Lepcha, Vishal Acharya, Rakshak Kumar |
IHM-DB: a curated collection of metagenomics data from the Indian Himalayan Region, and automated pipeline for 16S rRNA amplicon-based analysis (AutoQii2). |
Database J. Biol. Databases Curation |
2023 |
DBLP DOI BibTeX RDF |
|
| 21 | Rémi Gschwind, Svetlana Ugarcina perovic, Maja Weiss, Marie Petitjean, Julie Lao, Luís Pedro Coelho, Etienne Ruppé |
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
| 21 | Tianqi Zhang, Antonio González, Niema Moshiri, Rob Knight 0001, Tajana Rosing |
GenoMiX: Accelerated Simultaneous Analysis of Human Genomics, Microbiome Metagenomics, and Viral Sequences. |
BioCAS |
2023 |
DBLP DOI BibTeX RDF |
|
| 21 | Anuradha Wickramarachchi, Yu Lin 0001 |
Binning long reads in metagenomics datasets using composition and coverage information. |
Algorithms Mol. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Julien Tremblay, Lars Schreiber, Charles W. Greer |
High-resolution shotgun metagenomics: the more data, the better? |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Zhongqing Zhang, Qiqi Jiao, Yang Zhang, Bo Liu 0023, Yadong Wang, Junyi Li |
OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection. |
Comput. Biol. Chem. |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Zhong Wang |
Introduction to Computational Metagenomics |
|
2022 |
DOI RDF |
|
| 21 | Varuni Sarwal, Serghei Mangul, David Koslicki |
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. |
IPDPS Workshops |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Anuradha Wickramarachchi, Yu Lin 0001 |
Metagenomics Binning of Long Reads Using Read-Overlap Graphs. |
RECOMB-CG |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Jyotsna Talreja Wassan, Haiying Wang 0001, Huiru Zheng |
A New Phylogeny-Driven Random Forest-Based Classification Approach for Functional Metagenomics. |
BIBM |
2022 |
DBLP DOI BibTeX RDF |
|
| 21 | Benjamin Churcheward |
Models and methods for genome-resolved metagenomics. (Modèles et méthodes pour la métagénomique à résolution génomique). |
|
2022 |
RDF |
|
| 21 | Kiran Gajanan Javkar |
Algorithms for scalable and efficient population genomics and metagenomics. |
|
2022 |
RDF |
|
| 21 | David Conchouso, Amani D. Alma'abadi, Hayedeh Behzad, Mohammed Alarawi, Masahito Hosokawa, Yohei Nishikawa, Haruko Takeyama, Katsuhiko Mineta, Takashi Gojobori |
Integration of Droplet Microfluidic Tools for Single-Cell Functional Metagenomics: An Engineering Head Start. |
Genom. Proteom. Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Zachary Deng, Eric Delwart |
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Samuel M. Gerner, Alexandra B. Graf, Thomas Rattei |
Tamock: simulation of habitat-specific benchmark data in metagenomics. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Hayato Takihara, Nobuaki Miura, Kiyoko F. Aoki-Kinoshita, Shujiro Okuda |
Functional glyco-metagenomics elucidates the role of glycan-related genes in environments. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Masood ur Rehman Kayani, Wanqiu Huang, Ru Feng, Lei Chen |
Genome-resolved metagenomics using environmental and clinical samples. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Alexis Hill, James Rybarski, Kuang Hu, Ilya Finkelstein, Claus O. Wilke |
Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets. |
J. Open Source Softw. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Babak Saremi, Moritz Kohls, Pamela Liebig, Ursula Siebert, Klaus Jung |
Measuring reproducibility of virus metagenomics analyses using bootstrap samples from FASTQ-files. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Lauren M. Lui, Torben N. Nielsen, Adam P. Arkin |
A method for achieving complete microbial genomes and improving bins from metagenomics data. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Renaud Van Damme, Martin Hölzer, Adrian Viehweger, Bettina Müller, Erik Bongcam-Rudloff, Christian Brandt |
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN). |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Anuradha Wickramarachchi, Yu Lin 0001 |
LRBinner: Binning Long Reads in Metagenomics Datasets. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 21 | Tyler Faits |
The evaluation, application, and expansion of 16s amplicon metagenomics |
|
2021 |
RDF |
|
| 21 | Maxence Queyrel |
End-to-End Deep Learning and Subgroup discovery approaches to learn from metagenomics data. (Approches basées sur les réseau de neurones et la découverte de sous-groupes pour l'apprentissage machine à partir à partir de données métagénomiques). |
|
2021 |
RDF |
|
| 21 | Congmin Xu |
Metagenomics analysis of disease-related human gut microbiota. |
|
2021 |
RDF |
|
| 21 | Robin Kobus, José Manuel Abuín, André Müller, Sören Lukas Hellmann, Juan Carlos Pichel, Tomás F. Pena, Andreas Hildebrandt 0001, Thomas Hankeln, Bertil Schmidt |
A big data approach to metagenomics for all-food-sequencing. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Xinyan Zhang, Nengjun Yi |
NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Yi Yue, Hao Huang, Zhao Qi, Hui-Min Dou, Xin-Yi Liu, Tian-Fei Han, Yue Chen, Xiang-Jun Song, You-Hua Zhang, Jian Tu |
Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | William S. Pearman, Nikki E. Freed, Olin K. Silander |
Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Michael A. Peabody, Wing Yin Venus Lau, Gemma Hoad, Baofeng Jia, Finlay Maguire, Kristen L. Gray, Robert G. Beiko, Fiona S. L. Brinkman |
PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Xinyan Zhang, Nengjun Yi |
Fast zero-inflated negative binomial mixed modeling approach for analyzing longitudinal metagenomics data. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Vitor Piro, Temesgen Hailemariam Dadi, Enrico Seiler, Knut Reinert, Bernhard Y. Renard |
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Gaëtan Benoit, Mahendra Mariadassou, Stéphane Robin, Sophie Schbath, Pierre Peterlongo, Claire Lemaitre |
SimkaMin: fast and resource frugal de novo comparative metagenomics. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Florian P. Breitwieser, Steven L. Salzberg |
Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Anuradha Wickramarachchi, Vijini Mallawaarachchi, Vaibhav Rajan, Yu Lin 0001 |
MetaBCC-LR: metagenomics binning by coverage and composition for long reads. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Dustin Cobas, Veli Mäkinen, Massimiliano Rossi 0001 |
Tailoring r-index for metagenomics. |
CoRR |
2020 |
DBLP BibTeX RDF |
|
| 21 | Luca Verderame, Ivan Merelli, Lucia Morganti, Elena Corni, Daniele Cesini, Daniele D'Agostino, Alessio Merlo |
A secure cloud-edges computing architecture for metagenomics analysis. |
Future Gener. Comput. Syst. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin |
Fast Approximation of Frequent k-Mers and Applications to Metagenomics. |
J. Comput. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Wui Wang Lui, Amy Wing-Sze Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo |
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. |
BIBM |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Dustin Cobas, Veli Mäkinen, Massimiliano Rossi 0001 |
Tailoring r-index for Document Listing Towards Metagenomics Applications. |
SPIRE |
2020 |
DBLP DOI BibTeX RDF |
|
| 21 | Thoralf Reis, Thomas Krause, Marco X. Bornschlegl, Matthias L. Hemmje |
A Conceptual Architecture for AI-based Big Data Analysis and Visualization Supporting Metagenomics Research. |
CERC |
2020 |
DBLP BibTeX RDF |
|
| 21 | Chen Li 0023, Yiqi Jiang, Shuaicheng Li 0001 |
LEMON: a method to construct the local strains at horizontal gene transfer sites in gut metagenomics. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Milko Krachunov, Maria Nisheva, Dimitar Vassilev |
Machine Learning Models for Error Detection in Metagenomics and Polyploid Sequencing Data. |
Inf. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Wenyu Shi, Heyuan Qi, Qinglan Sun, Guomei Fan, Shuangjiang Liu, Jun Wang, Baoli Zhu, Hongwei Liu, Fangqing Zhao, Xiaochen Wang, Xiaoxuan Hu, Wei Li, Jia Liu, Ye Tian, Linhuan Wu, Juncai Ma |
gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data. |
Nucleic Acids Res. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Rebecca Rose, Olga Golosova, Dmitrii Sukhomlinov, Aleksey Tiunov, Mattia Prosperi |
Flexible design of multiple metagenomics classification pipelines with UGENE. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Mateo Rojas-Carulla, Ilya O. Tolstikhin, Guillermo Luque, Nicholas D. Youngblut, Ruth E. Ley, Bernhard Schölkopf |
GeNet: Deep Representations for Metagenomics. |
CoRR |
2019 |
DBLP BibTeX RDF |
|
| 21 | Daniele D'Agostino, Lucia Morganti, Elena Corni, Daniele Cesini, Ivan Merelli |
Combining Edge and Cloud computing for low-power, cost-effective metagenomics analysis. |
Future Gener. Comput. Syst. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Jose Manuel Martí |
Recentrifuge: Robust comparative analysis and contamination removal for metagenomics. |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Jose Manuel Martí |
Correction: Recentrifuge: Robust comparative analysis and contamination removal for metagenomics. |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Romain Menegaux, Jean-Philippe Vert |
Continuous Embeddings of DNA Sequencing Reads and Application to Metagenomics. |
J. Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin |
Fast Approximation of Frequent k-mers and Applications to Metagenomics. |
RECOMB |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Isis Bonet, Alejandro Peña, Christian Lochmuller, Alejandro Patino 0001, Mario Gongora 0001 |
Deep Clustering for Metagenomics. |
CIBB |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Ari Ugarte, Minh Quang-Dao, Bich Hai Ho, Chloe Vigliotti, Eugeni Belda, Jean-Daniel Zucker, Edi Prifti |
QMSpy: An Integrated Modular and Scalable Platform for Quantitative Metagenomics in Pyspark. |
RIVF |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Masahito Ohue, Marina Yamasawa, Kazuki Izawa, Yutaka Akiyama |
Parallelized Pipeline for Whole Genome Shotgun Metagenomics with GHOSTZ-GPU and MEGAN. |
BIBE |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Ying-Feng Hsu, Makiko Ito, Takumi Maruyama, Morito Matsuoka, Nicolas Jung, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura |
Deep Learning Approach for Pathogen Detection Through Shotgun Metagenomics Sequence Classification. |
AIME |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Anthony Ayodeji Adegoke, Emmanuel Adetiba, Daniel T. Babalola, Matthew Boladele Akanle, Surendra Thakur, Anthony I. Okoh, Olayinka Ayobami Aiyegoro |
Detection of Pools of Bacteria with Public Health Importance in Wastewater Effluent from a Municipality in South Africa Using Next Generation Sequencing and Metagenomics Analysis. |
IWBBIO (2) |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Paulo Oliveira 0003, Kleber Padovani de Souza, Ronnie Alves |
On Clustering Validation in Metagenomics Sequence Binning. |
BSB |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Soha Hassoun, Yasser El-Manzalawy, Georg Gerber, David Koslicki, Gail Rosen |
Workshop on Microbiomics, Metagenomics, and Metabolomics. |
BCB |
2019 |
DBLP DOI BibTeX RDF |
|
| 21 | Ehsaneddin Asgari |
Life Language Processing: Deep Learning-based Language-agnostic Processing of Proteomics, Genomics/Metagenomics, and Human Languages. |
|
2019 |
RDF |
|
| 21 | Wei Zheng 0010 |
Efficient sequence clustering and embedding algorithms for large-scale metagenomics data. |
|
2019 |
RDF |
|
| 21 | Diego Fioravanti, Ylenia Giarratano, Valerio Maggio, Claudio Agostinelli, Marco Chierici, Giuseppe Jurman, Cesare Furlanello |
Phylogenetic convolutional neural networks in metagenomics. |
BMC Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Han Lin, Zhichao Su, Xiandong Meng, Xu Jin, Zhong Wang, Wenting Han, Hong An, Mengxian Chi, Zheng Wu |
Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive. |
Int. J. Parallel Program. |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Terje Klemetsen, Inge Alexander Raknes, Juan Fu, Alexander Agafonov, Sudhagar V. Balasundaram, Giacomo Tartari, Espen Mikal Robertsen, Nils Peder Willassen |
The MAR databases: development and implementation of databases specific for marine metagenomics. |
Nucleic Acids Res. |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Alex L. Mitchell, Maxim Scheremetjew, Hubert Denise, Simon C. Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A. Salazar, Sebastien Pesseat, Miguel A. Boland, Fiona M. I. Hunter, Petra ten Hoopen, Blaise T. F. Alako, Clara Amid, Darren J. Wilkinson, Thomas P. Curtis, Guy Cochrane, Robert D. Finn |
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. |
Nucleic Acids Res. |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Thanh Hai Nguyen 0001, Edi Prifti, Yann Chevaleyre, Nataliya Sokolovska, Jean-Daniel Zucker |
Disease Classification in Metagenomics with 2D Embeddings and Deep Learning. |
CoRR |
2018 |
DBLP BibTeX RDF |
|
| 21 | Ivan Merelli, Lucia Morganti, Elena Corni, Carmelo Pellegrino, Daniele Cesini, Luca Roverelli, Gabriele Zereik, Daniele D'Agostino |
Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things. |
Future Gener. Comput. Syst. |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Ying-Feng Hsu, Morito Matsuoka, Nicolas Jung, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura |
A High-Performance Sequence Analysis Engine for Shotgun Metagenomics through GPU Acceleration. |
BIBE |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Guangyu Zhou, Jyun-Yu Jiang, Chelsea J.-T. Ju, Wei Wang 0010 |
Inferring Microbial Communities for City Scale Metagenomics Using Neural Networks. |
BIBM |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Dengfeng Guan, Bo Liu 0023, Yadong Wang |
deSPI: efficient classification of metagenomics reads with lightweight de Bruijn graph-based reference indexing. |
BIBM |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | João Carlos Sequeira, Miguel Rocha 0001, Maria Madalena Alves, Andreia Ferreira Salvador |
MOSCA: An Automated Pipeline for Integrated Metagenomics and Metatranscriptomics Data Analysis. |
PACBB |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Golestan Sally Radwan, Hugh P. Shanahan |
Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis. |
CMSB |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Pablo Rodríguez-Brazzarola, Esteban Pérez-Wohlfeil, Sergio Díaz Del Pino, Ricardo Holthausen, Oswaldo Trelles |
Analyzing the Differences Between Reads and Contigs When Performing a Taxonomic Assignment Comparison in Metagenomics. |
IWBBIO (1) |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Jessica S. Rahman, Jinyan Li 0001, Juanying Xie, Shoshana Fogelman, Michael Blumenstein |
Connectivity Based Method for Clustering Microbial Communities from Metagenomics Data of Water and Soil Samples. |
IJCNN |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Vitor Cirilo Araujo Santos, Leandro Corrêa, Bianchi Serique Meiguins, Guilherme Oliveira, Ronnie Alves |
Metagenomics-based signature clustering and interactive visualization analysis. |
IJCNN |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Illyoung Choi, Alise J. Ponsero, Ken Youens-Clark, Matthew Bomhoff, Bonnie L. Hurwitz, John H. Hartman |
Libra: Improved Partitioning Strategies for Massive Comparative Metagenomics Analysis. |
ScienceCloud@HPDC |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke |
On the way to research objects for environmental genomics (or metagenomics). |
RO |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Amani Al-Ajlan, Achraf El Allali |
The Effect of Machine Learning Algorithms on Metagenomics Gene Prediction. |
ICBRA |
2018 |
DBLP DOI BibTeX RDF |
|
| 21 | Cervin Guyomar |
Développement et applications d'outils d'analyse métagénomique des communautés microbiennes associées aux insectes. (Bioinformatic tools and applications for metagenomics of microbial communities associated to insects). |
|
2018 |
RDF |
|
| 21 | Thanh Hai Nguyen |
Some contributions to deep learning for metagenomics. (Quelques contributions à l'apprentissage en profondeur pour la métagénomique). |
|
2018 |
RDF |
|
| 21 | Csaba Kerepesi |
Data Mining in Genomics, Metagenomics and Connectomics |
|
2018 |
RDF |
|
| 21 | Espen Mikal Robertsen, Hubert Denise, Alex L. Mitchell, Robert D. Finn, Lars Ailo Bongo, Nils Peder Willassen |
ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services. |
F1000Research |
2017 |
DBLP DOI BibTeX RDF |
|
| 21 | Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu |
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
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| 21 | Jennifer Lu, Florian P. Breitwieser, Peter Thielen, Steven L. Salzberg |
Bracken: estimating species abundance in metagenomics data. |
PeerJ Comput. Sci. |
2017 |
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