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GrowBag graphs for keyword ? (Num. hits/coverage)
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Results
Found 79 publication records. Showing 79 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
49 | Juan J. Diaz-Montana, Owen J. L. Rackham, Norberto Díaz-Díaz, Enrico Petretto |
Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data. |
Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
|
36 | Arvind K. Bansal, Christopher Woolverton |
Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways. |
IEEE Trans. Knowl. Data Eng. |
2003 |
DBLP DOI BibTeX RDF |
enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria |
28 | Paul Dan Cristea, Rodica Tuduce, Jan Cornelis 0001 |
Inserts in prokaryotegenomes. |
BIBE |
2008 |
DBLP DOI BibTeX RDF |
|
28 | Xudong Huang |
Metallobiochemistry of Alzheimer's Disease and Its Theranostic Agent Development. |
BIBE |
2007 |
DBLP DOI BibTeX RDF |
|
28 | Iuri Fanti, Mattia C. F. Prosperi, Giovanni Ulivi, Alessandro Micarelli |
HIV-1 Coreceptor Usage Prediction via Indexed Local Kernel Smoothing Methods and Grid-Based Multiple Statistical Validation. |
CBMS |
2007 |
DBLP DOI BibTeX RDF |
|
24 | Hao Zhang 0064, Jiao Jiao, Tianheng Zhao, Enshuang Zhao, Lanhui Li, Guihua Li, Borui Zhang, Qing-Ming Qin |
GERWR: Identifying the Key Pathogenicity- Associated sRNAs of Magnaporthe Oryzae Infection in Rice Based on Graph Embedding and Random Walk With Restart. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
24 | Ke Bai, Lu Yang, Jian Xue, Lin Zhao, Fanchang Hao |
Pathogenicity classification of missense mutations based on deep generative model. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
24 | Zheng Wang 0069, Guihu Zhao, Bin Li, Zhenghuan Fang, Qian Chen, Xiaomeng Wang, Tengfei Luo, Yijing Wang 0003, Qiao Zhou, Kuokuo Li, Lu Xia, Yi Zhang, Xun Zhou, Hongxu Pan, Yuwen Zhao, Yige Wang, Lin Wang, Jifeng Guo, Beisha Tang, Kun Xia, Jinchen Li |
Performance Comparison of Computational Methods for the Prediction of the Function and Pathogenicity of Non-coding Variants. |
Genom. Proteom. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Shi-Yuan Tong, Ke Fan, Zai-Wei Zhou, Lin-Yun Liu, Shu-Qing Zhang, Yinghui Fu, Guang-Zhong Wang, Ying Zhu 0012, Yong-Chun Yu |
mvPPT: A Highly Efficient and Sensitive Pathogenicity Prediction Tool for Missense Variants. |
Genom. Proteom. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Enas M. F. El Houby |
Correction to: Machine learning techniques for pathogenicity prediction of non-synonymous single nucleotide polymorphisms in human body. |
J. Ambient Intell. Humaniz. Comput. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Enas M. F. El Houby |
Machine learning techniques for pathogenicity prediction of non-synonymous single nucleotide polymorphisms in human body. |
J. Ambient Intell. Humaniz. Comput. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Tzu-Hsuan Wu, Peng-Chan Lin, Hsin-Hung Chou, Meng-Ru Shen, Sun-Yuan Hsieh |
Pathogenicity Prediction of Single Amino Acid Variants With Machine Learning Model Based on Protein Structural Energies. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Lijun Quan, Xiaomin Chu, Xiaoyu Sun 0006, Tingfang Wu, Qiang Lyu |
How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding and Facilitates Prediction of Single Nucleotide Variant Pathogenicity With a Deep Learning Model Trained On ChIP-Seq Data Sets. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Yuya Hatano, Tomohiko Ishihara, Osamu Onodera |
Accuracy of a machine learning method based on structural and locational information from AlphaFold2 for predicting the pathogenicity of TARDBP and FUS gene variants in ALS. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Xiao Fan, Hongbing Pan, Alan Tian, Wendy K. Chung, Yufeng Shen |
SHINE: protein language model-based pathogenicity prediction for short inframe insertion and deletion variants. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Boshen Wang, Xue Lei, Wei Tian 0003, Alan Perez-Rathke, Yan-Yuan Tseng, Jie Liang 0002 |
Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Axel Schmidt 0007, Sebastian Röner, Karola Mai, Hannah Klinkhammer, Martin Kircher, Kerstin U. Ludwig |
Predicting the pathogenicity of missense variants using features derived from AlphaFold2. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Huixin Zhan, Zijun Zhang |
ProPath: Disease-Specific Protein Language Model for Variant Pathogenicity. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Samuel J. Aronson, Kalotina Machini, Pranav Sriraman, Jiyeon Shin, Emma R. Henricks, Charlotte Mailly, Angie J. Nottage, Michael Oates, Matthew S. Lebo |
Using GPT-4 Prompts to Determine Whether Articles Contain Functional Evidence Supporting or Refuting Variant Pathogenicity. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Ke Li, James M. McCaw, Pengxing Cao |
Enhanced viral infectivity and reduced interferon production are associated with high pathogenicity for influenza viruses. |
PLoS Comput. Biol. |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Yijia Chen, Yiwen Chen, Shanling Nie, Hai Yang 0002 |
PMMVar: Leveraging Multi-level Protein Structures for Enhanced Coding Variant Pathogenicity Prediction. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Alam Ahmad Hidayat, Joko Pebrianto Trinugroho, Rudi Nirwantono, Digdo Sudigyo, Bens Pardamean |
Utilizing Semi-supervised Method in Predicting BRCA1 Pathogenicity Variants. |
ICCSCI |
2023 |
DBLP DOI BibTeX RDF |
|
24 | Philipp Rentzsch |
Using machine learning to predict pathogenicity of genomic variants throughout the human genome. |
|
2023 |
RDF |
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24 | Shaked Naor-Hoffmann, Dina Svetlitsky, Neta Sal-Man, Yaron Orenstein, Michal Ziv-Ukelson |
Predicting the pathogenicity of bacterial genomes using widely spread protein families. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Yaning Yang, Xiaoqi Wang, Deshan Zhou, Dong-Qing Wei, Shaoliang Peng |
SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Mingyan Fang, Zheng Su, Hassan Abolhassani, Yuval Itan, Xin Jin, Lennart Hammarström |
VIPPID: a gene-specific single nucleotide variant pathogenicity prediction tool for primary immunodeficiency diseases. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D. Robin, Krzysztof Gogolewski, Anna Gambin |
TADeus2: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure. |
Nucleic Acids Res. |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Liangpeng Nie, Lijun Quan, Tingfang Wu, Ruji He, Qiang Lyu |
TransPPMP: predicting pathogenicity of frameshift and non-sense mutations by a Transformer based on protein features. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Reza Alibakhshi, Mohsen Kazeminia, Keivan Moradi |
The pathogenicity classification of PAH gene variants in the Iranian population. |
Comput. Biol. Chem. |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Metin Yazar, Pemra Ozbek |
Assessment of 13 in silico pathogenicity methods on cancer-related variants. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Ke Bai 0006, Zhendong Liu, Xinrong Lv, Dongyan Li, Xi Chen, Xiaofeng Li, Junxue Zhou |
Pathogenicity predicting algorithm of single amino acid variants. |
CIS |
2022 |
DBLP DOI BibTeX RDF |
|
24 | Dareen Alyousfi, Diana Baralle, Andrew Collins 0001 |
Essentiality-specific pathogenicity prioritization gene score to improve filtering of disease sequence data. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
24 | Dhong-Gun Won, Dong-Wook Kim, Junwoo Woo, Kyoungyeul Lee |
3Cnet: pathogenicity prediction of human variants using multitask learning with evolutionary constraints. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
24 | Bas Vroling, Stephan Heijl |
White paper: The Helix Pathogenicity Prediction Platform. |
CoRR |
2021 |
DBLP BibTeX RDF |
|
24 | Alessandro F. Gualtieri, Mauro Leoncini, Lorenzo Rinaldi, Alessandro Zoboli, Dario Di Giuseppe |
WebFPTI: A tool to predict the toxicity/pathogenicity of mineral fibres including asbestos. |
Earth Sci. Informatics |
2021 |
DBLP DOI BibTeX RDF |
|
24 | Xuyang Zhen, Guan Ning Lin |
PPSNV: A Novel Predictor for Pathogenicity of Nonsynonymous SNV based on Ensemble Learning. |
ICBBS |
2021 |
DBLP DOI BibTeX RDF |
|
24 | Luca Ponzoni, Daniel A. Peñaherrera, Zoltán N. Oltvai, Ivet Bahar |
Rhapsody: predicting the pathogenicity of human missense variants. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
24 | Luying Pan |
The Molecular Dynamics Study on the PATHOGENICITy of Cystatin C Mutant. |
ICBBE |
2020 |
DBLP DOI BibTeX RDF |
|
24 | Naeem Rehmat, Hammad Farooq, Sanjay Kumar, Sibt ul Hussain, Hammad Naveed |
Predicting the pathogenicity of protein coding mutations using Natural Language Processing. |
EMBC |
2020 |
DBLP DOI BibTeX RDF |
|
24 | Enrico Mossotto, J. J. Ashton, L. O'Gorman, Reuben J. Pengelly, R. M. Beattie, Ben D. MacArthur, Sarah Ennis |
GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Ning Tang, Thomas D. Sandahl, Peter Ott, Kasper P. Kepp |
Computing the Pathogenicity of Wilson's Disease ATP7B Mutations: Implications for Disease Prevalence. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Ning Tang, Budheswar Dehury, Kasper P. Kepp |
Computing the Pathogenicity of Alzheimer's Disease Presenilin 1 Mutations. |
J. Chem. Inf. Model. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Roberto Preste, Ornella Vitale, Rosanna Clima, Giuseppe Gasparre, Marcella Attimonelli |
HmtVar: a new resource for human mitochondrial variations and pathogenicity data. |
Nucleic Acids Res. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Eran Barash, Neta Sal-Man, Sivan Sabato, Michal Ziv-Ukelson |
BacPaCS - Bacterial Pathogenicity Classification via Sparse-SVM. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Kymberleigh A. Pagel, Danny Antaki, Aojie Lian, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac |
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Abhishek Niroula, Mauno Vihinen |
How good are pathogenicity predictors in detecting benign variants? |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Akshay Chadha, Rozita Dara 0001, Zvonimir Poljak |
Convolutional Classification of Pathogenicity in H5 Avian Influenza Strains. |
ICMLA |
2019 |
DBLP DOI BibTeX RDF |
|
24 | Juan M. R. Albano, Nahuel Mussini, Roxana Toriano, Julio C. Facelli, Marta B. Ferraro, Mónica Pickholz |
Calcium interactions with Cx26 hemmichannel: Spatial association between MD simulations biding sites and variant pathogenicity. |
Comput. Biol. Chem. |
2018 |
DBLP DOI BibTeX RDF |
|
24 | Diana F. Rojas-Rengifo, María Camila Alvarez-Silva, Cindy P. Ulloa-Guerrero, Vanessa Lucía Nuñez-Velez, María del Pilar Delgado, Sonia Milena Aguilera, Harold Castro, Carlos Alberto Jaramillo, Andrés Fernando González Barrios |
Intramolecular energies of the cytotoxic protein CagA of Helicobacter pylori as a possible descriptor of strains' pathogenicity level. |
Comput. Biol. Chem. |
2018 |
DBLP DOI BibTeX RDF |
|
24 | Krzysztof Bartoszek, Marta Majchrzak, Sebastian Sakowski, Anna B. Kubiak-Szeligowska, Ingemar Kaj, Pawel Parniewski |
Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling. |
PLoS Comput. Biol. |
2018 |
DBLP DOI BibTeX RDF |
|
24 | Shuang Li, K. Joeri van der Velde, Morris A. Swertz |
Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation. |
eScience |
2018 |
DBLP DOI BibTeX RDF |
|
24 | R. Michael Sivley |
Constraint on Rare Protein-Coding Variation: Pathogenicity Prediction and Phenotypic Discovery. |
|
2018 |
RDF |
|
24 | Parul Mehrotra, Kanury Rao, Samrat Chatterjee |
A mathematical model predicting host mitochondrial pyruvate transporter activity to be a critical regulator of Mycobacterium tuberculosis pathogenicity. |
Biosyst. |
2017 |
DBLP DOI BibTeX RDF |
|
24 | Sanjay Sonney, Jeremy Leipzig, Marie T. Lott, Shiping Zhang, Vincent Procaccio, Douglas C. Wallace, Neal Sondheimer |
Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP. |
PLoS Comput. Biol. |
2017 |
DBLP DOI BibTeX RDF |
|
24 | Jacob Shujui Hsu, Johnny S. H. Kwan, Zhicheng Pan, Maria-Mercè Garcia-Barcelo, Pak Chung Sham, Miao-Xin Li |
Inheritance-mode specific pathogenicity prioritization (ISPP) for human protein coding genes. |
Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
|
24 | Seema Patel |
In silico analysis of Hepatitis C virus (HCV) polyprotein domains and their comparison with other pathogens and allergens to gain insight on pathogenicity mechanisms. |
Comput. Biol. Chem. |
2016 |
DBLP DOI BibTeX RDF |
|
24 | Arjun K. Manrai, Brice L. Wang, Chirag J. Patel, Isaac S. Kohane |
Reproducible and Shareable Quantifications of Pathogenicity. |
PSB |
2016 |
DBLP BibTeX RDF |
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24 | Arnon Benshahar, Vered Chalifa-Caspi, Danny Hermelin, Michal Ziv-Ukelson |
A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity Islands. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
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24 | Sabine C. Mueller, Christina Backes, Jan Haas, Hugo A. Katus, Benjamin Meder, Eckart Meese, Andreas Keller |
Pathogenicity prediction of non-synonymous single nucleotide variants in dilated cardiomyopathy. |
Briefings Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
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24 | Nadine Castelhano Santos, Maria Olívia Pereira, Anália Lourenço |
Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties. |
Briefings Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
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24 | Sung Ho Yoon, Young-Kyu Park, Jihyun F. Kim |
PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands. |
Nucleic Acids Res. |
2015 |
DBLP DOI BibTeX RDF |
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24 | Daniel Quang, Yifei Chen, Xiaohui Xie |
DANN: a deep learning approach for annotating the pathogenicity of genetic variants. |
Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
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24 | Mansuck Kim, Huan Zhang, Charles Woloshuk, Won-Bo Shim, Byung-Jun Yoon |
Computational identification of key functional genes associated with fusarium verticillioides pathogenicity. |
BCB |
2015 |
DBLP DOI BibTeX RDF |
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24 | Yi Zhang, Shili Jia, Haiyun Huang |
The prediction of pathogenicity of the influenza virus based on HA protein sequences. |
ICMLC |
2014 |
DBLP DOI BibTeX RDF |
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24 | Mansuck Kim, Huan Zhang, Charles Woloshuk, Won-Bo Shim, Byung-Jun Yoon |
Computational identification of functional network modules associated with the pathogenicity of Fusarium verticillioides. |
BCB |
2014 |
DBLP DOI BibTeX RDF |
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24 | Richard Röttger, Prabhav Kalaghatgi, Peng Sun 0008, Siomar de Castro Soares, Vasco Ariston de Carvalho Azevedo, Tobias Wittkop, Jan Baumbach |
Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles. |
Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
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24 | David K. Crockett, Elaine Lyon, Marc S. Williams, Scott P. Narus, Julio C. Facelli, Joyce A. Mitchell |
Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants. |
J. Am. Medical Informatics Assoc. |
2012 |
DBLP DOI BibTeX RDF |
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24 | Oleg N. Reva, Oliver Bezuidt |
Visualization of Distribution of Pathogenicity Genomic Islands between Pathogenic, Nosocomial and Environmental Bacteria. |
IV |
2012 |
DBLP DOI BibTeX RDF |
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24 | Ruiguang Ge, Weiran Shan |
Bacterial Phosphoproteomic Analysis Reveals the Correlation Between Protein Phosphorylation and Bacterial Pathogenicity. |
Genom. Proteom. Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
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24 | Stewart T. Chang, Nicolas Tchitchek, Debashis Ghosh, Arndt Benecke, Michael G. Katze |
A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections. |
BMC Syst. Biol. |
2011 |
DBLP DOI BibTeX RDF |
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24 | Li-Ping Xie, Sheng-feng Weng, Shao-Shi He, Shu-wei Tian |
Bioinformatics analysis of CagM protein in Helicobacter pylori Cag pathogenicity island. |
FSKD |
2011 |
DBLP DOI BibTeX RDF |
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24 | Su Yean Ong, Fui Ling Ng, Siti Suriawati Badai, Anton Yuryev, Maqsudul Alam |
Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi. |
J. Integr. Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
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24 | Jamal Alhiyafi, Cavitha Sabesan, Shiyong Lu, Jeffrey L. Ram |
Association analysis between Intragenomic Gene Conversions and pathogenicity in genomes of Escherichia coli and Shigella spp.: a scientific workflow approach. |
Int. J. Funct. Informatics Pers. Medicine |
2009 |
DBLP DOI BibTeX RDF |
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24 | Sachin Pundhir, Hemant Vijayvargiya, Anil Kumar |
PredictBias: A Server for the Identification of Genomic and Pathogenicity Islands in Prokaryotes. |
Silico Biol. |
2008 |
DBLP BibTeX RDF |
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24 | Sung Ho Yoon, Young-Kyu Park, Soohyun Lee, Doil Choi, Tae Kwang Oh, Cheol-Goo Hur, Jihyun F. Kim |
Towards pathogenomics: a web-based resource for pathogenicity islands. |
Nucleic Acids Res. |
2007 |
DBLP DOI BibTeX RDF |
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24 | F. Collyn, Lionel Guy, M. Marceau, M. Simonet, Claude-Alain H. Roten |
Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics. |
Bioinform. |
2006 |
DBLP DOI BibTeX RDF |
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24 | Georgios S. Vernikos, Julian Parkhill |
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. |
Bioinform. |
2006 |
DBLP DOI BibTeX RDF |
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24 | Sung Ho Yoon, Cheol-Goo Hur, Ho-Young Kang, Yeoun Hee Kim, Tae Kwang Oh, Jihyun F. Kim |
A computational approach for identifying pathogenicity islands in prokaryotic genomes. |
BMC Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
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24 | Pietro Liò, Marina Vannucci |
Finding pathogenicity islands and gene transfer events in genome data. |
Bioinform. |
2000 |
DBLP DOI BibTeX RDF |
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