Search results for "siRNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
268	WeiPing Chen, Wei Zha, Terry Cox, Xiujun Zhao, Paul Russell	3Si: A Computer Program for the Optimal Design of Short Interfering RNA (siRNA) for Gene Silencing.	CBMS	2004	DBLP DOI BibTeX RDF
166	WeiPing Chen, Dongying Wu, Wei Zha, Paul Russell	Identification of Highly Significant Sequence Patterns in siRNAs for the Optimal Design of siRNA.	CBMS	2004	DBLP DOI BibTeX RDF
115	Shibin Qiu, Terran Lane	A Framework for Multiple Kernel Support Vector Regression and Its Applications to siRNA Efficacy Prediction.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	multiple kernel heuristics, QCQP optimization, RNA interference, siRNA efficacy, support vector regression, Multiple kernel learning
85	Shibin Qiu, Terran Lane	Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction.	ISBRA	2008	DBLP DOI BibTeX RDF
85	Shibin Qiu, Terran Lane	The RNA String Kernel for siRNA Efficacy Prediction.	BIBE	2007	DBLP DOI BibTeX RDF
85	Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran	Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data.	WABI	2007	DBLP DOI BibTeX RDF
75	Willard Frutiger, Jeremy Collins, Wei Hu	Using Random Perturbation Method to Improve Efficacy Prediction of siRNA Sequences.	BMEI (1)	2008	DBLP DOI BibTeX RDF	siRNA, linear model, random perturbation
70	Jyoti K. Shah, Harold R. Garner, Michael A. White, David S. Shames, John D. Minna	sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
51	Shibin Qiu, Terran Lane, Cundong Yang	Efficient search algorithms for RNAi target detection.	J. Supercomput.	2007	DBLP DOI BibTeX RDF	RNAi target detection, String inexact matching, Reverse string search, Off-target, siRNA seed region, String kernels
47	Sandra Claveau	Fluorescent nanodiamonds as siRNA vectors : in vitro efficacy evaluation and high-content/high-resolution quantifications of their distribution in vivo. (Nanodiamants fluorescents pour la vectorisation de siRNA : évaluation in vitro et quantifications haut-débit/haute-résolution in vivo).		2018	RDF
47	Matthias Truss, Maciej Swat, Szymon M. Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier	HuSiDa - the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
47	Bingbing Yuan, Robert Latek, Markus Hossbach, Thomas Tuschl, Fran Lewitter	siRNA Selection Server: an automated siRNA oligonucleotide prediction server.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
47	Luquan Wang, Forest Y. Mu	A Web-based design center for vector-based siRNA and siRNA cassette.	Bioinform.	2004	DBLP DOI BibTeX RDF
44	Paolo Cusinato, Stefano Cipriani, Guglielmo Sirna, Gianni Puccio, Eric Duvivier	Gain/bandwidth programmable PA control loop for GMS/GPRS quad-band applications.	ISCAS (1)	2004	DBLP DOI BibTeX RDF
44	Eric Duvivier, Gianni Puccio, Stefano Cipriani, Lorenzo Carpineto, Paolo Cusinato, Biagio Bisanti, Fabrice Galant, Frédéric Chalet, Francesco Coppola, Sever Cercelaru, Nathalie Vallespin, Jean-Christophe Jiguet, Gugliemo Sirna	A fully integrated zero-IF transceiver for GSM-GPRS quad-band application.	IEEE J. Solid State Circuits	2003	DBLP DOI BibTeX RDF
44	Ranjit Gharpurey, Naveen Yanduru, Francesco Dantoni, Petteri Litmanen, Guglielmo Sirna, Terry Mayhugh Jr., Charles Lin, Irene Yuanying Deng, Paul Fontaine, Fang Lin	A direct-conversion receiver for the 3G WCDMA standard.	IEEE J. Solid State Circuits	2003	DBLP DOI BibTeX RDF
44	Ranjit Gharpurey, Naveen Yanduru, Francesco Dantoni, Petteri Litmanen, Guglielmo Sirna, Terry Mayhugh Jr., Charles Lin, Irene Yuanying Deng, Paul Fontaine, Fang Lin	A direct conversion receiver for the 3G WCDMA standard.	CICC	2002	DBLP DOI BibTeX RDF
41	Young Bun Kim, Jean Gao, Johanne V. Pastor, Kevin P. Rosenblatt	Signaling biomarker pattern discovery using reverse phase protein microarray.	BIBE	2008	DBLP DOI BibTeX RDF
41	Lauren Tal, Diana Huang, Niloufar Haque, Nasreen S. Haque	Microarray analysis reveals CC chemokine CCL-1 responsive gene expression in human HeLa cells.	SCSC	2007	DBLP BibTeX RDF	microarray, gene expression
41	Shibin Qiu, Terran Lane	Phase Transitions in Gene Knockdown Networks of Transitive RNAi.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
23	Tareian A. Cazares, Richard E. Higgs, Jibo Wang, Hatice Gulcin Ozer	SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments.	Bioinform.	2024	DBLP DOI BibTeX RDF
23	Damilola Oshunyinka	Machine Learning Modeling Of SiRNA Structure-Potency Relationship With Applications Against Sars-Cov-2 Spike Gene.	CoRR	2024	DBLP DOI BibTeX RDF
23	Zerong Feng, Jiejie Feng, Baoyi Zhang, Yuhan Fei, Hongsheng Zhang, Ji Huang	PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences.	Bioinform.	2023	DBLP DOI BibTeX RDF
23	Meng-Xin Chen, Xiaodong Zhu 0001, Hao Zhang, Zhen Liu, Yuan-Ning Liu	SMRI: A New Method for siRNA Design for COVID-19 Therapy.	J. Comput. Sci. Technol.	2022	DBLP DOI BibTeX RDF
23	P. W. C. M. Purijjala, P. V. G. M. Rathnayake, B. T. Kumara, B. C. M. Gunathunge, R. A. A. P. Ranasinghe, D. N. Karunaratne, R. J. K. U. Ranatunga	Multiscale modeling of the cellular uptake of C6 peptide-siRNA complexes.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
23	Syed Shahariar Bappy, Abu Zaffar Shibly, Sorna Sultana, A. K. M. Mohiuddin, Yearul Kabir	Designing potential siRNA molecule for the nucleocapsid(N) gene silencing of different SARS-CoV-2 strains of Bangladesh: Computational approach.	Comput. Biol. Chem.	2021	DBLP DOI BibTeX RDF
23	Partha Sarathi Mohanty, Sandeep Sharma, Farah Naaz, Dilip Kumar, Archana Raikwar, Shripad A. Patil	Inhibition ofMycobacterium tuberculosis tRNA-LigasesUsing siRNA-Based Gene Silencing Method: A Computational Approach.	J. Comput. Biol.	2020	DBLP DOI BibTeX RDF
23	Paulette A. Greenidge, Marcel J. J. Blommers, John P. Priestle, Jürg Hunziker	How to Computationally Stack the Deck for Hit-to-Lead Generation: In Silico Molecular Interaction Energy Profiling for de Novo siRNA Guide Strand Surrogate Selection.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
23	Jerzy Tiuryn, Ewa Szczurek	Learning signaling networks from combinatorial perturbations by exploiting siRNA off-target effects.	Bioinform.	2019	DBLP DOI BibTeX RDF
23	Vladimir P. Zhdanov	Intracellular miRNA or siRNA delivery and function.	Biosyst.	2018	DBLP DOI BibTeX RDF
23	Costa Bachas, Jasmina Hodzic, Johannes C. van der Mijn, Chantal Stoepker, Henk M. W. Verheul, Rob M. F. Wolthuis, Emanuela Felley-Bosco, Wessel N. van Wieringen, Victor W. van Beusechem, Ruud H. Brakenhoff, Renée X. de Menezes	Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
23	Jongyeun Park, Seung Hyun Ahn, Kwang Moon Cho, Dowoon Gu, Eun-Sook Jang, Sung Wook Chi	siAbasic: a comprehensive database for potent siRNA-6Ø sequences without off-target effects.	Database J. Biol. Databases Curation	2018	DBLP DOI BibTeX RDF
23	Kelly Daescu	endo-siRBase: A multi-species developmental endo-siRNA repository and searchable database.	ICCABS	2018	DBLP DOI BibTeX RDF
23	Ye Han, Yuanning Liu, Hao Zhang 0064, Fei He 0003, Chonghe Shu, Liyan Dong	Utilizing Selected Di- and Trinucleotides of siRNA to Predict RNAi Activity.	Comput. Math. Methods Medicine	2017	DBLP DOI BibTeX RDF
23	Qi Liu, Changjun Ding, Yanguang Chu, Weixi Zhang, Ganggang Guo, Jiafei Chen, Xiaohua Su	Pln24NT: a web resource for plant 24-nt siRNA producing loci.	Bioinform.	2017	DBLP DOI BibTeX RDF
23	Vishwambhar Vishnu Bhandare, Amutha Ramaswamy	Identification of possible siRNA molecules for TDP43 mutants causing amyotrophic lateral sclerosis: In silico design and molecular dynamics study.	Comput. Biol. Chem.	2016	DBLP DOI BibTeX RDF
23	Inuk Jung, Hongryul Ahn, Seon-Ju Shin, Jukon Kim, Hawk-Bin Kwon, Woosuk Jung, Sun Kim	Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice.	BMC Syst. Biol.	2016	DBLP DOI BibTeX RDF
23	Bui Thang Ngoc, Tu Bao Ho, Tatsuo Kanda	A semi-supervised tensor regression model for siRNA efficacy prediction.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
23	Piotr J. Kamola, Yuko Nakano, Tomoko Takahashi, Paul A. Wilson 0002, Kumiko Ui-Tei	The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
23	Bui Ngoc Thang, Le Sy Vinh, Ho Tu Bao	MVRM: A Hybrid Approach to Predict siRNA Efficacy.	KSE	2015	DBLP DOI BibTeX RDF
23	Qi Liu 0019, Han Zhou, Ruixin Zhu, Ying Xu 0001, Zhiwei Cao	Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions.	Briefings Bioinform.	2014	DBLP DOI BibTeX RDF
23	H. Zhou, H. Wang	A Database-Based Two-Phase Algorithm For Efficient and Complete Detection of siRNA Off-Target Homology.	Informatica (Slovenia)	2014	DBLP BibTeX RDF
23	Changqing Zhang, Guangping Li 0003, Shinong Zhu, Shuo Zhang, Jinggui Fang	tasiRNAdb: a database of ta-siRNA regulatory pathways.	Bioinform.	2014	DBLP DOI BibTeX RDF
23	Apichat Suratanee, Martin H. Schaefer 0001, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König	Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
23	Wei Hu, John Hu	Prediction of siRNA Potency Using Sparse Logistic Regression.	J. Comput. Biol.	2014	DBLP DOI BibTeX RDF
23	Bui Thang Ngoc	A Novel Framework to Improve siRNA Efficacy Prediction.	PAKDD (2)	2014	DBLP DOI BibTeX RDF
23	Takanori Ueda, Daisuke Tominaga, Noriko Araki, Tomohiro Yoshikawa	Estimate hidden dynamic profiles of siRNA effect on apoptosis.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
23	Sangeeta Saxena, Rupesh K. Kesharwani, Vinayak Singh, Sarita Singh	Designing of putative siRNA against geminiviral suppressors of RNAi to develop geminivirus-resistant papaya crop.	Int. J. Bioinform. Res. Appl.	2013	DBLP DOI BibTeX RDF
23	Rebecca E. Saunders, Rachael Instrell, Rossella Rispoli, Ming Jiang, Michael Howell	HTS-DB: an online resource to publish and query data from functional genomics high-throughput siRNA screening projects.	Database J. Biol. Databases Curation	2013	DBLP DOI BibTeX RDF
23	Wen-Ling Chan, Wen-Kuang Yang, Hsien-Da Huang, Jan-Gowth Chang	pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes.	Database J. Biol. Databases Curation	2013	DBLP DOI BibTeX RDF
23	Yuanning Liu, Yaping Chang, Chao Zhang 0032, Qingkai Wei, Jingbo Chen, Hui-Ling Chen 0001, Dong Xu 0002	Influence of mRNA Features on siRNA Interference Efficacy.	J. Bioinform. Comput. Biol.	2013	DBLP DOI BibTeX RDF
23	Yuanning Liu, Ya-Ping Chang, Dong Xu 0002, Zhi Li, Hao Zhang 0064, Jie Li, Mingyao Tian	Optimised design of siRNA based on multi-featured comparison and analysis of H1N1 virus.	Int. J. Data Min. Bioinform.	2013	DBLP DOI BibTeX RDF
23	Karol Kozak, Sandra Kaestner, Thomas Wild, Andreas Vonderheit, Benjamin Misselwitz, Ulrike Kutay, Gabor Csucs	New Algorithm for Analysis of Off-target Effects in siRNA Screens.	BIOINFORMATICS	2013	DBLP BibTeX RDF
23	Bui Thang Ngoc, Tu Bao Ho, Saori Kawasaki	A Descriptive Method for Generating siRNA Design Rules.	ACIIDS (2)	2013	DBLP DOI BibTeX RDF
23	Krzysztof Puszynski, Roman Jaksik, Andrzej Swierniak	Regulation of p53 by siRNA in radiation treated cells: Simulation studies.	Int. J. Appl. Math. Comput. Sci.	2012	DBLP DOI BibTeX RDF
23	Slawek Mazur, Gabor Csucs, Karol Kozak	RNAiAtlas: a database for RNAi (siRNA) libraries and their specificity.	Database J. Biol. Databases Curation	2012	DBLP DOI BibTeX RDF
23	Nishant Thakur, Abid Qureshi, Manoj Kumar 0003	VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
23	Mohamed Mysara, Mahmoud ElHefnawi, Jonathan M. Garibaldi	MysiRNA: Improving siRNA efficacy prediction using a machine-learning model combining multi-tools and whole stacking energy (ΔG).	J. Biomed. Informatics	2012	DBLP DOI BibTeX RDF
23	Antong Chen, Belma Dogdas, Saurin Mehta, Kathleen Haskell, Bruce Ng, Ed Keough, Bonnie Howell, D. Adam Meacham, Amy G. Aslamkhan, Joseph Davide, Matthew Stanton, Ansuman Bagchi, Laura Sepp-Lorenzino, Weikang Tao	Quantification of Cy-5 siRNA signal in the intra-vital multi-photon microscopy images.	EMBC	2012	DBLP DOI BibTeX RDF
23	William-Chandra Tjhi, Gary Kee Khoon Lee, Terence Hung, Ivor Wai-Hung Tsang, Yew-Soon Ong, Frédéric Bard, Victor Racine	Exploratory analysis of cell-based screening data for phenotype identification in drug-siRNA study.	Int. J. Comput. Biol. Drug Des.	2011	DBLP DOI BibTeX RDF
23	Harun M. Said, Buelent Polat, Matthias Guckenberger, Adrian Staab, Carsten Hagemann, Jelena Anacker, Michael Flentje, Dirk Vordermark	Gene expression inhibition of N-Myc downregulated gene 1 (NDRG1) monitoring and facilitation via transfectional transfer of NDRG1-siRNA constructs into- in vitro-cultured human glioblastoma cells.	BMEI	2011	DBLP DOI BibTeX RDF
23	Qi Liu 0019, Qian Xu 0005, Vincent Wenchen Zheng, Hong Xue 0001, Zhi-Wei Cao, Qiang Yang 0001	Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
23	Apichat Suratanee, Ilka Rebhan, Petr Matula, Anil Kumar 0006, Lars Kaderali, Karl Rohr, Ralf Bartenschlager, Roland Eils, Rainer König	Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Shigeru Takasaki	Efficient prediction methods for selecting effective siRNA sequences.	Comput. Biol. Medicine	2010	DBLP DOI BibTeX RDF
23	Yamuna Prasad, Kanad K. Biswas, Chakresh Kumar Jain	SVM Classifier Based Feature Selection Using GA, ACO and PSO for siRNA Design.	ICSI (2)	2010	DBLP DOI BibTeX RDF
23	Chakresh Kumar Jain, Yamuna Prasad	Modeling for Evaluation of Significant Features in siRNA Design.	IC3 (1)	2010	DBLP DOI BibTeX RDF
23	Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei	siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
23	Ka-Lok Ng, Hsueh-Chuan Liu, Shan-Chih Lee	ncRNAppi - a tool for identifying disease-related miRNA and siRNA targeting pathways.	Bioinform.	2009	DBLP DOI BibTeX RDF
23	Jochen W. Klingelhoefer, Loukas Moutsianas, Christopher C. Holmes	Approximate Bayesian feature selection on a large meta-dataset offers novel insights on factors that effect siRNA potency.	Bioinform.	2009	DBLP DOI BibTeX RDF
23	Shigeru Takasaki	Selecting effective siRNA target sequences by using Bayes' theorem.	Comput. Biol. Chem.	2009	DBLP DOI BibTeX RDF
23	Yan Nei Law, Stephen Ogg, John Common, David Tan, E. Birgitte Lane, Andy M. Yip, Hwee Kuan Lee	Automated Protein Distribution Detection in High-Throughput Image-Based siRNA Library Screens.	J. Signal Process. Syst.	2009	DBLP DOI BibTeX RDF	Keratin proteins, RNA interference, Mutant detection, Image analysis, Fluorescence microscopy
23	Armand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl	Knowledge based identification of essential signaling from genome-scale siRNA experiments.	BMC Syst. Biol.	2009	DBLP DOI BibTeX RDF
23	Chakresh Kumar Jain, Yamuna Prasad	Feature Selection for siRNA Efficacy Prediction using Natural Computation.	NaBIC	2009	DBLP DOI BibTeX RDF
23	Pirkko Muhonen, Ranga N. Parthasarathy, Anthony J. Janckila, Kalman G. Büki, H. Kalervo Väänänen	Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules.	Source Code Biol. Medicine	2008	DBLP DOI BibTeX RDF
23	Zhi John Lu, David H. Mathews	OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
23	Young-Kyu Park, Seong-Min Park, Young-Chul Choi, Doheon Lee, Misun Won, Young Joo Kim	AsiDesigner: exon-based siRNA design server considering alternative splicing.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
23	Wuming Gong, Yongliang Ren, Haiyan Zhou, Yejun Wang, Shuli Kang, Tongbin Li	siDRM: an effective and generally applicable online siRNA design tool.	Bioinform.	2008	DBLP DOI BibTeX RDF
23	Alistair M. Chalk, Erik L. L. Sonnhammer	siRNA specificity searching incorporating mismatch tolerance data.	Bioinform.	2008	DBLP DOI BibTeX RDF
23	Shibin Qiu, Terran Lane	siRNA silencing efficacy prediction using the RNA string kernel.	Int. J. Comput. Biol. Drug Des.	2008	DBLP DOI BibTeX RDF
23	Petr Matula, Anil Kumar 0006, Ilka Wörz, Nathalie Harder, Holger Erfle, Ralf Bartenschlager, Roland Eils, Karl Rohr	Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy.	Bildverarbeitung für die Medizin	2008	DBLP DOI BibTeX RDF
23	Shigeru Takasaki, Yoshihoro Kawamura	Using radial basis function networks and significance testing to select effective siRNA sequences.	Comput. Stat. Data Anal.	2007	DBLP DOI BibTeX RDF
23	Xudong Dai, Angus T. De Souza, Hongyue Dai, David L. Lewis, Chang-Kyu Lee, Andy G. Spencer, Hans Herweijer, Jim E. Hagstrom, Peter S. Linsley, Douglas E. Bassett, Roger G. Ulrich, Yudong D. He	PPARα siRNA-Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced Liver Hypertrophy.	PLoS Comput. Biol.	2007	DBLP DOI BibTeX RDF
23	Peng Jiang, Haonan Wu, Yao Da, Fei Sang, Jiawei Wei, Xiao Sun 0006, Zuhong Lu	RFRCDB-siRNA: Improved design of siRNAs by random forest regression model coupled with database searching.	Comput. Methods Programs Biomed.	2007	DBLP DOI BibTeX RDF
23	Shyamala Iyer, Kerry Deutsch, Xiaowei Yan, Biaoyang Lin	Batch RNAi selector: A standalone program to predict specific siRNA candidates in batches with enhanced sensitivity.	Comput. Methods Programs Biomed.	2007	DBLP DOI BibTeX RDF
23	Jean-Philippe Vert, Nicolas Foveau, Christian Lajaunie, Yves Vandenbrouck	An accurate and interpretable model for siRNA efficacy prediction.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Peilin Jia, Tieliu Shi, Yudong Cai 0001, Yixue Li	Demonstration of two novel methods for predicting functional siRNA efficiency.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Shigeru Takasaki, Yoshihiro Kawamura, Akihiko Konagaya	Selecting effective siRNA sequences by using radial basis function network and decision tree learning.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Wuming Gong, Yongliang Ren, Qiqi Xu, Yejun Wang, Dong Lin, Haiyan Zhou, Tongbin Li	Integrated siRNA design based on surveying of features associated with high RNAi effectiveness.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Svetlana A. Shabalina, Alexey N. Spiridonov, Aleksey Y. Ogurtsov	Computational models with thermodynamic and composition features improve siRNA design.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka Takebe, Kaoru Saigo	siVirus: web-based antiviral siRNA design software for highly divergent viral sequences.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
23	Hong Zhou, Xiao Zeng, Yufang Wang, Benjamin Ray Seyfarth	A Three-Phase Algorithm for Computer Aided siRNA Design.	Informatica (Slovenia)	2006	DBLP BibTeX RDF
23	Shigeru Takasaki, Yoshihiro Kawamura, Akihiko Konagaya	Selecting effective siRNA sequences based on the self-organizing map and statistical techniques.	Comput. Biol. Chem.	2006	DBLP DOI BibTeX RDF
23	Hong Zhou, Yufang Wang, Xiao Zeng	Fast and Complete Search of siRNA Off-target Sequences.	BIOCOMP	2006	DBLP BibTeX RDF
23	Alistair M. Chalk, Richard E. Warfinge, Patrick Georgii-Hemming, Erik L. L. Sonnhammer	siRNAdb: a database of siRNA sequences.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
23	Tomoyuki Yamada, Shinichi Morishita	Accelerated off-target search algorithm for siRNA.	Bioinform.	2005	DBLP DOI BibTeX RDF
23	Siu-Ming Yiu, Prudence W. H. Wong, Tak Wah Lam, Y. C. Mui, Hsiang-fu Kung, Marie C. M. Lin, Y. T. Cheung	Filtering of Ineffective siRNAs and Improved siRNA Design Tool.	Bioinform.	2005	DBLP DOI BibTeX RDF
23	Wenzhong Zhao, Terran Lane	siRNA off-target search: a hybrid q-gram based filtering approach.	BIOKDD	2005	DBLP DOI BibTeX RDF
23	Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo	siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
23	Natasha Levenkova, Qingjuan Gu, John J. Rux	Gene specific siRNA selector.	Bioinform.	2004	DBLP DOI BibTeX RDF
23	J. Zillies, C. Coester	A New Delivery System for Double Stranded siRNA Oligonucleotides Based on Gelatin Nanoparticles.	ICMENS	2004	DBLP DOI BibTeX RDF