Search results for "uniprot"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
69	The UniProt Consortium	UniProt: the Universal Protein Knowledgebase in 2023.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
69	Sebastien Gehant, Elisabeth Coudert, Anne Morgat, Jerven T. Bolleman, Nicole Redaschi, Alan J. Bridge, The UniProt Consortium	UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands.	SWAT4HCLS	2023	DBLP BibTeX RDF
69	The UniProt Consortium	UniProt: a worldwide hub of protein knowledge.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
69	The UniProt Consortium	UniProt: the universal protein knowledgebase.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
54	Fabrice P. A. David, Yum Lina Yip	SSMap: A new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
54		The UniProt Consortium: The Universal Protein Resource (UniProt).	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
42	Jerven T. Bolleman, Alan J. Bridge, Nicole Redaschi, The UniProt Consortium	Making expert curated knowledge graphs FAIR.	SWAT4HCLS	2023	DBLP BibTeX RDF
42	Anne Morgat, Thierry Lombardot, Elisabeth Coudert, Kristian B. Axelsen, Teresa Batista Neto, Sebastien Gehant, Parit Bansal, Jerven T. Bolleman, Elisabeth Gasteiger, Edouard De Castro, Delphine Baratin, Monica Pozzato, Ioannis Xenarios, Sylvain Poux, Nicole Redaschi, Alan J. Bridge, The UniProt Consortium	Enzyme annotation in UniProtKB using Rhea.	Bioinform.	2020	DBLP DOI BibTeX RDF
42	Xavier Watkins, Leyla J. García, Sangya Pundir, Maria Jesus Martin, The UniProt Consortium	ProtVista: visualization of protein sequence annotations.	Bioinform.	2017	DBLP DOI BibTeX RDF
42	Sylvain Poux, Cecilia N. Arighi, Michele Magrane, Alex Bateman, Chih-Hsuan Wei, Zhiyong Lu, Emmanuel Boutet, Hema Bye-A-Jee, Maria Livia Famiglietti, Bernd Roechert, The UniProt Consortium	On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.	Bioinform.	2017	DBLP DOI BibTeX RDF
36	Azza Abouzied, Kamil Bajda-Pawlikowski, Jiewen Huang, Daniel J. Abadi, Avi Silberschatz	HadoopDB in action: building real world applications.	SIGMOD Conference	2010	DBLP DOI BibTeX RDF	hadoopdb, hive, tpc-h, uniprot, semantic web, mapreduce, hadoop, parallel database
27	Oussama Hamel, Messaouda Fareh	Missing Types Prediction in Linked Data Using Deep Neural Network with Attention Mechanism: Case Study on DBpedia and UniProt Datasets.	ISM@FedCSIS	2022	DBLP DOI BibTeX RDF
27	Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny 0002, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra 0004, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan J. Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang 0003, Yuqi Wang, Lai-Su Yeh, Jian Zhang 0051, Patrick Ruch, Douglas Teodoro	UniProt: the universal protein knowledgebase in 2021.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
27	Alistair MacDougall, Vladimir Volynkin, Rabie Saidi, Diego Poggioli, Hermann Zellner, Emma Hatton-Ellis, Vishal Joshi, Claire O'Donovan, Sandra E. Orchard, Andrea H. Auchincloss, Delphine Baratin, Jerven T. Bolleman, Elisabeth Coudert, Edouard De Castro, Chantal Hulo, Patrick Masson, Ivo Pedruzzi, Catherine Rivoire, Cecilia N. Arighi, Qinghua Wang 0003, Chuming Chen, Hongzhan Huang, John Garavelli, C. R. Vinayaka, Lai-Su Yeh, Darren A. Natale, Kati Laiho, Maria Jesus Martin, Alexandre Renaux, Klemens Pichler	UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.	Bioinform.	2021	DBLP DOI BibTeX RDF
27	Chiara Gabella, Christine Durinx, Ron Appel	Funding knowledgebases: Towards a sustainable funding model for the UniProt use case.	F1000Research	2017	DBLP DOI BibTeX RDF
27	Ruoyao Ding, Emmanuel Boutet, Damien Lieberherr, Michel Schneider, Michael Tognolli, Cathy H. Wu, K. Vijay-Shanker, Cecilia N. Arighi	eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality.	Database J. Biol. Databases Curation	2017	DBLP DOI BibTeX RDF
27	Marian B. Gorzalczany, Filip Rudzinski	UniProt protein sequence data classification using genetically-optimized fuzzy rule-based systems.	IFSA-SCIS	2017	DBLP DOI BibTeX RDF
27	Borisas Bursteinas, Ramona Britto, Benoit Bely, Andrea H. Auchincloss, Catherine Rivoire, Nicole Redaschi, Claire O'Donovan, Maria Jesus Martin	Minimizing proteome redundancy in the UniProt Knowledgebase.	Database J. Biol. Databases Curation	2016	DBLP DOI BibTeX RDF
27	Tunca Dogan, Alistair MacDougall, Rabie Saidi, Diego Poggioli, Alex Bateman, Claire O'Donovan, Maria Jesus Martin	UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.	Bioinform.	2016	DBLP DOI BibTeX RDF
27		UniProt: a hub for protein information.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
27	Panu Somervuo, Liisa Holm	SANSparallel: interactive homology search against Uniprot.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
27	Mélanie Courtot, Aleksandra Shypitsyna, Elena Speretta, Alexander Holmes, Tony Sawford, Tony Wardell, Maria Jesus Martin, Claire O'Donovan	UniProt-GOA: A Central Resource for Data Integration and GO Annotation.	SWAT4LS	2015	DBLP BibTeX RDF
27		Activities at the Universal Protein Resource (UniProt).	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
27		Update on activities at the Universal Protein Resource (UniProt) in 2013.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
27	Chuming Chen, Zhiwen Li, Hongzhan Huang, Baris E. Suzek, Cathy H. Wu	A fast Peptide Match service for UniProt Knowledgebase.	Bioinform.	2013	DBLP DOI BibTeX RDF
27	Sabrina de Azevedo Silveira	Enzymap: explorando metadados protéicos para modelagem e previsão de mudanças de anotação no Uniprot/Swiss-Prot.		2013	RDF
27	Emily C. Dimmer, Rachael P. Huntley, Yasmin Alam-Faruque, Tony Sawford, Claire O'Donovan, Maria Jesus Martin, Benoit Bely, Paul Browne, Wei Mun Chan, Ruth Y. Eberhardt, Michael Gardner, Kati Laiho, Duncan Legge, Michele Magrane, Klemens Pichler, Diego Poggioli, Harminder Sehra, Andrea H. Auchincloss, Kristian B. Axelsen, Marie-Claude Blatter, Emmanuel Boutet, Silvia Braconi-Quintaje, Lionel Breuza, Alan J. Bridge, Elisabeth Coudert, Anne Estreicher, Maria Livia Famiglietti, Serenella Ferro-Rojas, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Patrick Masson, Madelaine Moinat, Ivo Pedruzzi, Sylvain Poux, Catherine Rivoire, Bernd Roechert, Michel Schneider, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Lydie Bougueleret, Ghislaine Argoud-Puy, Isabelle Cusin, Paula Duek-Roggli, Ioannis Xenarios, Rolf Apweiler	The UniProt-GO Annotation database in 2011.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
27		Reorganizing the protein space at the Universal Protein Resource (UniProt).	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
27	Sabrina de Azevedo Silveira, Artur O. Rodrigues, Raquel Cardoso de Melo Minardi, Carlos Henrique da Silveira, Wagner Meira Jr.	ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot.	BioVis	2012	DBLP DOI BibTeX RDF
27	Michele Magrane	UniProt Knowledgebase: a hub of integrated protein data.	Database J. Biol. Databases Curation	2011	DBLP DOI BibTeX RDF
27	Samuel Patient, Maria Jesus Martin	Annotating UniProt Metagenomic and Environmental Sequences in UniMES.	BIOINFORMATICS	2011	DBLP BibTeX RDF
27		The Universal Protein Resource (UniProt) in 2010.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
27	Elena Beisswanger, Joachim Wermter, Udo Hahn	Aligning UniProt and MeSH - A Case Study on Human Protein Terms.	MedInfo	2010	DBLP DOI BibTeX RDF
27	Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E. Suzek, Maria Jesus Martin, Peter B. McGarvey, Elisabeth Gasteiger	Infrastructure for the life sciences: design and implementation of the UniProt website.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
27		The Universal Protein Resource (UniProt) 2009.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
27	Anaïs Mottaz, Yum Lina Yip, Patrick Ruch, Anne-Lise Veuthey	Mapping proteins to disease terminologies: from UniProt to MeSH.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
27	Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, Rolf Apweiler	UniProtJAPI: a remote API for accessing UniProt data.	Bioinform.	2008	DBLP DOI BibTeX RDF
27		The Universal Protein Resource (UniProt).	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	Baris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu	UniRef: comprehensive and non-redundant UniProt reference clusters.	Bioinform.	2007	DBLP DOI BibTeX RDF
27	Yum Lina Yip, Nathalie Lachenal, Violaine Pillet, Anne-Lise Veuthey	Retrieving Mutation-Specific Information for Human proteins in UniProt/Swiss-PROT knowledgebase.	J. Bioinform. Comput. Biol.	2007	DBLP DOI BibTeX RDF
27	Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek	The Universal Protein Resource (UniProt): an expanding universe of protein information.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
27	Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh	The Universal Protein Resource (UniProt).	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
27	Philip Jones, Nisha Vinod, Thomas A. Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler	Dasty and UniProt DAS: a perfect pair for protein feature visualization.	Bioinform.	2005	DBLP DOI BibTeX RDF
27	Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, Rolf Apweiler	The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
27	Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh	UniProt: the Universal Protein knowledgebase.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
27	Rasko Leinonen, Federico Garcia Diez, David Binns, Wolfgang Fleischmann, Rodrigo Lopez, Rolf Apweiler	UniProt archive.	Bioinform.	2004	DBLP DOI BibTeX RDF
27	Evelyn Camon, Daniel Barrell, Vivian Lee, Emily Dimmer, Rolf Apweiler	The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase.	Silico Biol.	2003	DBLP BibTeX RDF
21	Justin J. Levandoski, Mohamed F. Mokbel	RDF Data-Centric Storage.	ICWS	2009	DBLP DOI BibTeX RDF
21	Thomas Neumann 0001, Gerhard Weikum	Scalable join processing on very large RDF graphs.	SIGMOD Conference	2009	DBLP DOI BibTeX RDF	query processing, rdf
21	Antonio J. Lara, Guillermo Pérez-Trabado, David P. Villalobos, Sara Díaz-Moreno, Francisco R. Cantón, M. Gonzalo Claros	A Web Tool to Discover Full-Length Sequences - Full-Lengther.	Innovations in Hybrid Intelligent Systems	2008	DBLP DOI BibTeX RDF
21	Souripriya Das, Eugene Inseok Chong, Zhe Wu, Melliyal Annamalai, Jagannathan Srinivasan	A Scalable Scheme for Bulk Loading Large RDF Graphs into Oracle.	ICDE	2008	DBLP DOI BibTeX RDF
21	Amos Bairoch	UniProtKB/Swiss-Prot: New and Future Developments.	DILS	2008	DBLP DOI BibTeX RDF
21	Henning Hermjakob	EBI Proteomics Services.	DILS	2008	DBLP DOI BibTeX RDF
21	François Belleau, Nicole Tourigny, Benjamin M. Good, Jean Morissette	Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse.	DILS	2008	DBLP DOI BibTeX RDF
21	Peter D. Karp, Thomas J. Lee, Valerie Wagner	BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats.	DILS	2008	DBLP DOI BibTeX RDF
21	J. Nathan Foster, Alexandre Pilkiewicz, Benjamin C. Pierce	Quotient lenses.	ICFP	2008	DBLP DOI BibTeX RDF	bidirectional languages, bijective languages, boomerang, regular string transducers, equivalences, lenses, view update problem, canonizers, regular types
21	Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar	Tracing Lineage in Multi-version Scientific Databases.	BIBE	2007	DBLP DOI BibTeX RDF
21	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Integration of Protein Data Sources Through PO.	DEXA	2006	DBLP DOI BibTeX RDF
21	Esther Schmidt, Ewan Birney, David Croft 0001, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu	Reactome - A Knowledgebase of Biological Pathways.	OTM Workshops (1)	2006	DBLP DOI BibTeX RDF	biological processes, pathways, knowledgebase
21	Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan	Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition.	RECOMB	2005	DBLP DOI BibTeX RDF
21	Mehmet M. Dalkilic	An Architecture and Application for Integrating Curation Data at the Residue Level for Proteins.	DILS	2005	DBLP DOI BibTeX RDF
21	Kevin W. Boyack, Ketan K. Mane, Katy Börner	Mapping Medline Papers, Genes, and Proteins Related to Melanoma Research.	IV	2004	DBLP DOI BibTeX RDF