Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Elisabeth Remy, Paul Ruet |
Average Sensitivity of Nested Canalizing Multivalued Functions. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Alexander Leguizamon-Robayo, Antonio Jiménez-Pastor, Mirco Tribastone, Max Tschaikowski, Andrea Vandin |
Approximate Constrained Lumping of Polynomial Differential Equations. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Mathieu Hemery, François Fages |
On Estimating Derivatives of Input Signals in Biochemistry. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Honglu Sun, Maxime Folschette, Morgan Magnin |
Condition for Periodic Attractor in 4-Dimensional Repressilators. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Paolo Ballarini, Mahmoud Bentriou, Paul-Henry Cournède |
A Formal Approach for Tuning Stochastic Oscillators. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Rocco De Nicola, Luca Di Stefano 0001, Omar Inverso, Serenella Valiani |
Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Takehide Soh, Morgan Magnin, Daniel Le Berre, Mutsunori Banbara, Naoyuki Tamura |
SAF: SAT-Based Attractor Finder in Asynchronous Automata Networks. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Elisa Tonello, Loïc Paulevé |
Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Joachim Niehren, Cédric Lhoussaine, Athénaïs Vaginay |
Core SBML and Its Formal Semantics. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jun Pang 0001, Joachim Niehren (eds.) |
Computational Methods in Systems Biology - 21st International Conference, CMSB 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Ulysse Herbach |
Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Lancelot Wathieu, Gus Henry Smith, Luis Ceze, Chris Thachuk |
Fridge Compiler: Optimal Circuits from Molecular Inventories. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Sara Riva, Jean-Marie Lagniez, Gustavo Magaña López, Loïc Paulevé |
Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Nikola Benes, Lubos Brim, Samuel Pastva, David Safránek, Eva Smijáková |
Phenotype Control of Partially Specified Boolean Networks. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Lilly Maria Treml |
3D Hybrid Cellular Automata for Cardiac Electrophysiology: A Concept Study. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Pelin Gundogdu, Miriam Payá-Milans, Inmaculada Alamo-Alvarez, Isabel A. Nepomuceno-Chamorro, Joaquín Dopazo, Carlos Loucera |
Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Iryna Zabaikina, Pavol Bokes, Abhyudai Singh |
Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Lorenzo Contento, Paul Stapor, Daniel Weindl, Jan Hasenauer |
A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI. |
CMSB |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Eléa Thibault Greugny, Georgios N. Stamatas, François Fages |
Stability Versus Meta-stability in a Skin Microbiome Model. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Martin Helfrich, Milan Ceska 0002, Jan Kretínský, Stefan Marticek |
Abstraction-Based Segmental Simulation of Chemical Reaction Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Clémence Réda, Andrée Delahaye-Duriez |
Prioritization of Candidate Genes Through Boolean Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Ville Laitinen, Leo Lahti |
Probabilistic Multivariate Early Warning Signals. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Georgios Argyris, Alberto Lluch-Lafuente, Mirco Tribastone, Max Tschaikowski, Andrea Vandin |
An Extension of ERODE to Reduce Boolean Networks By Backward Boolean Equivalence. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Svitlana Braichenko, Ramon Grima, Guido Sanguinetti |
Bayesian Learning of Effective Chemical Master Equations in Crowded Intracellular Conditions. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Matej Troják, David Safránek, Branislav Brozmann, Lubos Brim |
eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Hanna Josephine Wiederanders, Anne-Lena Moor, Christoph Zechner |
Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Joachim Niehren, Athénaïs Vaginay, Cristian Versari |
Abstract Simulation of Reaction Networks via Boolean Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Mathieu Hemery, François Fages |
Algebraic Biochemistry: A Framework for Analog Online Computation in Cells. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Samuel Pastva |
Variable Stabilisation in Boolean Monotonic Model Pools. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Honglu Sun, Maxime Folschette, Morgan Magnin |
Limit Cycle Analysis of a Class of Hybrid Gene Regulatory Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Antonio Jiménez-Pastor, Joshua Paul Jacob, Gleb Pogudin |
Exact Linear Reduction for Rational Dynamical Systems. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Fabricio Cravo, Matthias Függer, Thomas Nowak, Gayathri Prakash |
MobsPy: A Meta-species Language for Chemical Reaction Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Aurélien Desoeuvres, Peter Szmolyan, Ovidiu Radulescu |
Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Ion Petre, Andrei Paun (eds.) |
Computational Methods in Systems Biology - 20th International Conference, CMSB 2022, Bucharest, Romania, September 14-16, 2022, Proceedings |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Théo Roncalli, Loïc Paulevé |
Variable-Depth Simulation of Most Permissive Boolean Networks. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Van-Giang Trinh, Belaid Benhamou, Kunihiko Hiraishi, Sylvain Soliman |
Minimal Trap Spaces of Logical Models are Maximal Siphons of Their Petri Net Encoding. |
CMSB |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Gaurav Saxena, Miguel Ponce de Leon, Arnau Montagud, David Vicente Dorca, Alfonso Valencia |
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | David Doty, Eric E. Severson |
Ppsim: A Software Package for Efficiently Simulating and Visualizing Population Protocols. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Gleb Pogudin, Xingjian Zhang 0003 |
Interpretable Exact Linear Reductions via Positivity. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling |
Population Design for Synthetic Gene Circuits. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Yu. Zinovyev, Ovidiu Radulescu |
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Georgios Argyris, Alberto Lluch-Lafuente, Mirco Tribastone, Max Tschaikowski, Andrea Vandin |
Reducing Boolean Networks with Backward Boolean Equivalence. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Francesca Cairoli, Ginevra Carbone, Luca Bortolussi |
Abstraction of Markov Population Dynamics via Generative Adversarial Nets. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Eugenio Cinquemani, Loïc Paulevé (eds.) |
Computational Methods in Systems Biology - 19th International Conference, CMSB 2021, Bordeaux, France, September 22-24, 2021, Proceedings |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Mathilde Sautreuil, Sarah Lemler, Paul-Henry Cournède |
Neural Networks to Predict Survival from RNA-seq Data in Oncology. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Loïc Paulevé, Anne Siegel |
Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Ansuman Biswas, Ashutosh Gupta, Meghana Missula, Mukund Thattai |
Automated Inference of Production Rules for Glycans. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Nikola Benes, Lubos Brim, Samuel Pastva, David Safránek |
Aeon 2021: Bifurcation Decision Trees in Boolean Networks. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Ilia Ilmer, Alexey Ovchinnikov, Gleb Pogudin |
Web-Based Structural Identifiability Analyzer. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Tom Warnke, Adelinde M. Uhrmacher |
Nonlinear Pattern Matching in Rule-Based Modeling Languages. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Axel Theorell, Jörg Stelling |
Microbial Community Decision Making Models in Batch and Chemostat Cultures. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Candan Çelik, Pavol Bokes, Abhyudai Singh |
Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Laetitia Gibart, Hélène Collavizza, Jean-Paul Comet |
Greening R. Thomas' Framework with Environment Variables: A Divide and Conquer Approach. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Misbah Razzaq, Louisa Goumidi, Maria-Jesus Iglesias, Gaëlle Munsch, Maria Bruzelius, Manal Ibrahim-Kosta, Lynn Butler, Jacob Odeberg, Pierre-Emmanuel Morange, David Alexandre Tregouet |
Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Mathieu Hemery, François Fages, Sylvain Soliman |
Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs. |
CMSB |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Alexandru Oarga, Bridget Bannerman, Jorge Júlvez |
Growth Dependent Computation of Chokepoints in Metabolic Networks. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Eva Smijáková, Samuel Pastva, David Safránek, Lubos Brim |
Parallel Parameter Synthesis for Multi-affine Hybrid Systems from Hybrid CTL Specifications. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Gareth W. Molyneux, Alessandro Abate |
ABC(SMC)2: Simultaneous Inference and Model Checking of Chemical Reaction Networks. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Filipe Gouveia, Inês Lynce, Pedro T. Monteiro 0001 |
ModRev - Model Revision Tool for Boolean Logical Models of Biological Regulatory Networks. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Jorge Júlvez, Stephen G. Oliver |
fnyzer: A Python Package for the Analysis of Flexible Nets. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Robert Schwieger, Matías R. Bender, Heike Siebert, Christian Haase 0001 |
Classifier Construction in Boolean Networks Using Algebraic Methods. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Aurélien Desoeuvres, Gilles Trombettoni, Ovidiu Radulescu |
Interval Constraint Satisfaction and Optimization for Biological Homeostasis and Multistationarity. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Elisabeth Degrand, François Fages, Sylvain Soliman |
Graphical Conditions for Rate Independence in Chemical Reaction Networks. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Vincent Danos, Tobias Heindel, Ricardo Honorato-Zimmer, Sandro Stucki |
Rate Equations for Graphs. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert |
Control Strategy Identification via Trap Spaces in Boolean Networks. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Pavol Bokes, Julia Klein, Tatjana Petrov |
Accelerating Reactions at the DNA Can Slow Down Transient Gene Expression. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Ousmane Diop, Madalena Chaves, Laurent Tournier |
Qualitative Analysis of Mammalian Circadian Oscillations: Cycle Dynamics and Robustness. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Candan Çelik, Pavol Bokes, Abhyudai Singh |
Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Alessandro Abate, Tatjana Petrov, Verena Wolf (eds.) |
Computational Methods in Systems Biology - 18th International Conference, CMSB 2020, Konstanz, Germany, September 23-25, 2020, Proceedings |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Matej Troják, David Safránek, Lukrécia Mertová, Lubos Brim |
eBCSgen: A Software Tool for Biochemical Space Language. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Stefan Haar, Loïc Paulevé, Stefan Schwoon |
Drawing the Line: Basin Boundaries in Safe Petri Nets. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Luca Cardelli |
Kaemika App: Integrating Protocols and Chemical Simulation - Integrating Protocols and Chemical Simulation. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Stéphanie Chevalier, Vincent Noël, Laurence Calzone, Andrei Yu. Zinovyev, Loïc Paulevé |
Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Marielle Péré, Madalena Chaves, Jérémie Roux |
Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Cui Su, Jun Pang 0001 |
Sequential Temporary and Permanent Control of Boolean Networks. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Mathieu Hemery, François Fages, Sylvain Soliman |
On the Complexity of Quadratization for Polynomial Differential Equations. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Sophie Le Bars, Jérémie Bourdon, Carito Guziolowski |
Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Déborah Boyenval, Gilles Bernot, Hélène Collavizza, Jean-Paul Comet |
What is a Cell Cycle Checkpoint? The TotemBioNet Answer. |
CMSB |
2020 |
DBLP DOI BibTeX RDF |
|
1 | Kaan Öcal, Ramon Grima, Guido Sanguinetti |
Wasserstein Distances for Estimating Parameters in Stochastic Reaction Networks. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Josephine Lamp, Simone Silvetti, Marc D. Breton, Laura Nenzi, Lu Feng 0001 |
A Logic-Based Learning Approach to Explore Diabetes Patient Behaviors. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Luca Bortolussi, Guido Sanguinetti (eds.) |
Computational Methods in Systems Biology - 17th International Conference, CMSB 2019, Trieste, Italy, September 18-20, 2019, Proceedings |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Paul Piho, Filip Margetiny, Ezio Bartocci, Richard R. Ribchester, Jane Hillston |
Extending a Hodgkin-Huxley Model for Larval Drosophila Muscle Excitability via Particle Swarm Fitting. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Lenka Pribylová, Barbora Losová |
Symmetry Breaking for GATA-1/PU.1 Model. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Emilie Allart, Joachim Niehren, Cristian Versari |
Computing Difference Abstractions of Metabolic Networks Under Kinetic Constraints. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Ankit Gupta 0013, Mustafa Khammash, Guido Sanguinetti |
Bayesian Parameter Estimation for Stochastic Reaction Networks from Steady-State Observations. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky |
Transcriptional Response of SK-N-AS Cells to Methamidophos (Extended Abstract). |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Matej Hajnal, Morgane Nouvian, Tatjana Petrov, David Safránek |
Data-Informed Parameter Synthesis for Population Markov Chains. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Calin C. Guet, Thomas A. Henzinger, Claudia Igler, Tatjana Petrov, Ali Sezgin |
Transient Memory in Gene Regulation. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Christopher W. Lorton, Joshua L. Proctor, Min K. Roh, Philip A. Welkhoff |
Compartmental Modeling Software: A Fast, Discrete Stochastic Framework for Biochemical and Epidemiological Simulation. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Mahmoud Bentriou, Paolo Ballarini, Paul-Henry Cournède |
Reachability Design Through Approximate Bayesian Computation. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Melania Nowicka, Heike Siebert |
Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Isabel Cristina Pérez-Verona, Mirco Tribastone, Andrea Vandin |
A Large-Scale Assessment of Exact Model Reduction in the BioModels Repository. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Cui Su, Soumya Paul, Jun Pang 0001 |
Scalable Control of Asynchronous Boolean Networks. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Julien Martinelli, Jeremy Grignard, Sylvain Soliman, François Fages |
On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | George Assaf, Monika Heiner, Fei Liu 0006 |
Biochemical Reaction Networks with Fuzzy Kinetic Parameters in Snoopy. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Elisabeth Degrand, Mathieu Hemery, François Fages |
On Chemical Reaction Network Design by a Nested Evolution Algorithm. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Russ Harmer, Eugenia Oshurko |
KAMIStudio: An Environment for Biocuration of Cellular Signalling Knowledge. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Jacek Chodak, Monika Heiner |
Spike - Reproducible Simulation Experiments with Configuration File Branching. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Carlo Spaccasassi, Boyan Yordanov, Andrew Phillips, Neil Dalchau |
Fast Enumeration of Non-isomorphic Chemical Reaction Networks. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|
1 | Maria Pia Saccomani, Giuseppina Bellu, Stefania Audoly, Leontina D'Angiò |
A New Version of DAISY to Test Structural Identifiability of Biological Models. |
CMSB |
2019 |
DBLP DOI BibTeX RDF |
|