Search results for "CSB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Haifeng Li 0012, Keshu Zhang, Tao Jiang 0001	Robust and Accurate Cancer Classification with Gene Expression Profiling.	CSB	2005	DBLP DOI BibTeX RDF
1	Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Mellor-Crummey	Reconstructing Phylogenetic Networks Using Maximum Parsimony.	CSB	2005	DBLP DOI BibTeX RDF	phylogenetic networks, maximum parsimony, horizontal gene transfer
1	Yuji Kawada, Yasubumi Sakakibara	Discriminative Discovery of Transcription Factor Binding Sites from Location Data.	CSB	2005	DBLP DOI BibTeX RDF
1		Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2005, Stanford, CA, USA, August 8-11, 2005	CSB	2005	DBLP BibTeX RDF
1	Jinbo Xu, Feng Jiao, Bonnie Berger	A Tree-Decomposition Approach to Protein Structure Prediction.	CSB	2005	DBLP DOI BibTeX RDF
1	Tu Minh Phuong, Zhen Lin, Russ B. Altman	Choosing SNPs Using Feature Selection.	CSB	2005	DBLP DOI BibTeX RDF
1	Chengyong Yang, Erliang Zeng, Tao Li 0001, Giri Narasimhan	Clustering Genes Using Gene Expression and Text Literature Data.	CSB	2005	DBLP DOI BibTeX RDF	Biological Literature, Multi-Source Clustering, Text Mining, Gene Expression Data
1	Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos	Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data.	CSB	2005	DBLP DOI BibTeX RDF
1		BioSPICE and Use Cases.	CSB	2005	DBLP DOI BibTeX RDF
1	Pengjun Pei, Aidong Zhang	A Topological Measurement for Weighted Protein Interaction Network.	CSB	2005	DBLP DOI BibTeX RDF	weighted graph model, topological measurement, data integration, Protein-protein interaction, small world network, protein interaction network
1		Committees.	CSB	2005	DBLP DOI BibTeX RDF
1	Feng Gao 0016, Mohammed Javeed Zaki	PSIST: Indexing Protein Structures Using Suffix Trees.	CSB	2005	DBLP DOI BibTeX RDF
1	Michael Ashburner	Ontologies for Biologists - A Community Model for the Annotation of Genomic Data.	CSB	2005	DBLP DOI BibTeX RDF
1	Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai	Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes.	CSB	2005	DBLP DOI BibTeX RDF	RNA secondary structure profiling, Pseudo-knot search, Covariance model, Tree decomposition
1	Lincong Wang, Ramgopal R. Mettu, Bruce Randall Donald	An Algebraic Geometry Approach to Protein Structure Determination from NMR Data.	CSB	2005	DBLP DOI BibTeX RDF
1	Rui Mao 0001, Weijia Xu, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker	On Optimizing Distance-Based Similarity Search for Biological Databases.	CSB	2005	DBLP DOI BibTeX RDF
1	Will Sheffler, Eli Upfal, John Sedivy, William Stafford Noble	A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays.	CSB	2005	DBLP DOI BibTeX RDF	support vector machine, microarrays, gene expression
1	Benjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable	Consensus Genetic Maps: A Graph Theoretic Approach.	CSB	2005	DBLP DOI BibTeX RDF
1	Mohammed I. Rafiq, Martin J. O'Connor, Amar K. Das	Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases.	CSB	2005	DBLP DOI BibTeX RDF	temporal pattern recognition, statistical aggregation, biomedical genomics, HIV genotype testing
1	Aswath Manohar, Serafim Batzoglou	TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree.	CSB	2005	DBLP DOI BibTeX RDF
1	Anantharaman Kalyanaraman, Srinivas Aluru	Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons.	CSB	2005	DBLP DOI BibTeX RDF
1	Changyu Shen, Lang Li 0001, Jake Yue Chen	Discover True Association Rates in Multi-protein Complex Proteomics Data Sets.	CSB	2005	DBLP DOI BibTeX RDF
1	Zhong Chen, Ying Xu	Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins.	CSB	2005	DBLP DOI BibTeX RDF
1	Gabriela Alexe, Gyan Bhanot, Babu Venkataraghavan, Ramakrishna Ramaswamy, Jorge Lepre, Arnold J. Levine, Gustavo Stolovitzky	A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data.	CSB	2005	DBLP DOI BibTeX RDF
1	Susan L. Havre, Bobbie-Jo M. Webb-Robertson, Anuj R. Shah, Christian Posse, Banu Gopalan, Fred J. Brockman	Bioinformatic Insights from Metagenomics through Visualization.	CSB	2005	DBLP DOI BibTeX RDF	visualization, bioinformatics, categorical, metagenomics, nominal
1		BioImage Data Mining and Informatics.	CSB	2005	DBLP DOI BibTeX RDF
1	Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield, Eric Mjolsness	Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes.	CSB	2005	DBLP DOI BibTeX RDF
1	Peter M. Kasson, Mark M. Davis, Axel T. Brünger	Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking.	CSB	2005	DBLP DOI BibTeX RDF
1	Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini	Analysis of SNP-Expression Association Matrices.	CSB	2005	DBLP DOI BibTeX RDF
1	R. Nigam, S. Liang	A Pivoting Algorithm for Metabolic Networks in the Presence of Thermodynamic Constraints.	CSB	2005	DBLP DOI BibTeX RDF
1	Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner	Identification of Post-Translational Modifications via Blind Search of Mass-Spectra.	CSB	2005	DBLP DOI BibTeX RDF
1	Nalini Polavarapu, Shamkant B. Navathe, Ramprasad Ramnarayanan, Abrar ul Haque, Saurav Sahay, Ying Liu 0007	Investigation into Biomedical Literature Classification Using Support Vector Machines.	CSB	2005	DBLP DOI BibTeX RDF
1		Referees.	CSB	2005	DBLP DOI BibTeX RDF
1	Ron Kikinis	The National Alliance for Medical Imaging Computing (NA-MIC).	CSB	2005	DBLP DOI BibTeX RDF
1	Ravi Vijaya Satya, Amar Mukherjee	An Efficient Algorithm for Perfect Phylogeny Haplotyping.	CSB	2005	DBLP DOI BibTeX RDF
1	Russ B. Altman	Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures.	CSB	2005	DBLP DOI BibTeX RDF
1		Preface.	CSB	2005	DBLP DOI BibTeX RDF
1	Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble	Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves.	CSB	2005	DBLP DOI BibTeX RDF
1		Controlling Complexity.	CSB	2005	DBLP DOI BibTeX RDF
1	Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail	Islands of Tractability for Parsimony Haplotyping.	CSB	2005	DBLP DOI BibTeX RDF	approximation algorithm, complexity, fixed parameter tractability, genotype, parsimony, Haplotype inference
1	Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble	Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra.	CSB	2005	DBLP DOI BibTeX RDF	charge state, machine learning, support vector machine, proteomics, mass spectrometry
1	Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, David Horn	Motif Extraction and Protein Classification.	CSB	2005	DBLP DOI BibTeX RDF	motif extraction, enzyme classification
1	Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi	Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching.	CSB	2005	DBLP DOI BibTeX RDF
1	Zheng Yun, Kwoh Chee Keong 0001	Identifying Simple Discriminatory Gene Vectors with an Information Theory Approach.	CSB	2005	DBLP DOI BibTeX RDF
1	Arthur W. Toga	The Center for Computational Biology.	CSB	2005	DBLP DOI BibTeX RDF
1	Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu 0001	Accurate Prediction of Orthologous Gene Groups in Microbes.	CSB	2005	DBLP DOI BibTeX RDF
1	Sun Kim, Jeong-Hyeon Choi, Jiong Yang	Gene Teams with Relaxed Proximity Constraint.	CSB	2005	DBLP DOI BibTeX RDF
1	Lincong Wang, Bruce Randall Donald	An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings.	CSB	2005	DBLP DOI BibTeX RDF
1	Xutao Deng, Huimin Geng, Hesham H. Ali	Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks.	CSB	2005	DBLP DOI BibTeX RDF	gene function prediction, machine learning, Bayesian network, yeast
1	Greg Knowles, Paul Gardner-Stephen	A New Hardware Architecture for Genomic and Proteomic Sequence Alignment.	CSB	2004	DBLP DOI BibTeX RDF
1	Fang-Xiang Wu, Wen-Jun Zhang 0001, Anthony J. Kusalik	State-Space Model for Gene Regulatory Networks with Time Delays.	CSB	2004	DBLP DOI BibTeX RDF
1	Hee Young Kang, Hak Yong Kim	Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces Cerevisiae.	CSB	2004	DBLP DOI BibTeX RDF
1	Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang 0001, Ying Xu 0001	Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102.	CSB	2004	DBLP DOI BibTeX RDF
1	Weimin Feng, Gaurav Tuteja, May D. Wang	EGOMinor: A Genomics and Proteomics Data Computation and Interpretation System for Biomedical Applications.	CSB	2004	DBLP DOI BibTeX RDF
1	Anguraj Sadanandam, Michelle L. Varney, Rakesh K. Singh	High-Throughput Computational and Experimental Biology Strategy in Identifying Tumor Expressing CAMs.	CSB	2004	DBLP DOI BibTeX RDF
1	Hong Liu, Li Li, Asher Zilberstein, Chang S. Hahn	Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes.	CSB	2004	DBLP DOI BibTeX RDF	segmental duplication, deubiquitinating enzyme
1	Lei Chen, Shiyong Lu, Jeffrey L. Ram	Compressed Pattern Matching in DNA Sequences.	CSB	2004	DBLP DOI BibTeX RDF
1	Daniel Quest, Hesham H. Ali	Ontology Specific Data Mining Based on Dynamic Grammars.	CSB	2004	DBLP DOI BibTeX RDF
1	Shiming Dong, Eileen T. Kraemer	Calculation, Visualization, and Manipulation of MASTs (Maximum Agreement Subtrees).	CSB	2004	DBLP DOI BibTeX RDF
1		3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004	CSB	2004	DBLP BibTeX RDF
1	Xutao Deng, Hesham H. Ali	A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Robert C. Edgar	MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed.	CSB	2004	DBLP DOI BibTeX RDF
1	John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang	Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System.	CSB	2004	DBLP DOI BibTeX RDF
1	Yasuo Matsuyama, Ryo Kawamura	Promoter Recognition for E. coli DNA Segments by Independent Component Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Haifeng Li 0012, Keshu Zhang, Tao Jiang 0001	Minimum Entropy Clustering and Applications to Gene Expression Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Vineet Bafna, Shaojie Zhang	FastR: Fast Database Search Tool for Non-Coding RNA.	CSB	2004	DBLP DOI BibTeX RDF	non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search
1	Karuturi R. Krishna Murthy, Liu Jian Hua	Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction.	CSB	2004	DBLP DOI BibTeX RDF	Fourier transform, Microarray, Cell cycle, Gene prediction
1	Terrence S. T. Mak, Kai-Pui Lam	Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA.	CSB	2004	DBLP DOI BibTeX RDF
1	Zemin Ning, William Spooner, Adam Spargo, Steven Leonard, Mark Rae, Antony J. Cox	The SSAHA Trace Server.	CSB	2004	DBLP DOI BibTeX RDF
1	Andrey Gorin, Robert M. Day, Andrey Borziak, Michael B. Strader, Gregory B. Hurst, Tema Fridman	Probability Profile Method - New Approach to Data Analysis in Tandem Mass Spectrometry.	CSB	2004	DBLP DOI BibTeX RDF
1	Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu 0001	Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach.	CSB	2004	DBLP DOI BibTeX RDF
1	Xuanfu Wu, Zhengxin Chen	Recognition of Exon/Intron Boundaries Using Dynamic Ensembles.	CSB	2004	DBLP DOI BibTeX RDF
1	Sarah E. Boyd, Maria J. García de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy	PoPS: A Computational Tool for Modeling and Predicting Protease Specificity.	CSB	2004	DBLP DOI BibTeX RDF
1	Yan Ding, Hong Cao, Shu Wen	VirusFinder: A Web-Based Virus Identification System Using Viral Nucleotide Signatures.	CSB	2004	DBLP DOI BibTeX RDF
1	Alexandre Tchourbanov, Hesham H. Ali, Jitender S. Deogun	Using Enhancing Signals to Improve Specificity of ab initio Splice Site Sensors.	CSB	2004	DBLP DOI BibTeX RDF	ab initio methods, donor, acceptor, splicing enhancer, splicing silencer
1	Geoffrey Yang, Ming-Hsiu Ho, Earl Hubbell	High-Throughput Microarray-Based Genotyping.	CSB	2004	DBLP DOI BibTeX RDF
1	Sumeet Dua, Naveen Kandiraju	A Novel Computational Framework for Structural Classification of Proteins Using Local Geometric Parameter Matching.	CSB	2004	DBLP DOI BibTeX RDF
1	Tie Wang, Jeffrey W. Touchman, Guoliang Xue	Applying Two-Level Simulated Annealing on Bayesian Structure Learning to Infer Genetic Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Yuhang Wang, Fillia Makedon	Application of Relief-F Feature Filtering Algorithm to Selecting Informative Genes for Cancer Classification Using Microarray Data.	CSB	2004	DBLP DOI BibTeX RDF
1	K. Arun, Christopher James Langmead	Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction.	CSB	2004	DBLP DOI BibTeX RDF
1	Fei Nan, Donald A. Adjeroh	On Complexity Measures for Biological Sequences.	CSB	2004	DBLP DOI BibTeX RDF
1	Ying Liu 0007, Brian J. Ciliax, Karin Borges, Venu Dasigi, Ashwin Ram 0001, Shamkant B. Navathe, Ray Dingledine	Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene Clustering.	CSB	2004	DBLP DOI BibTeX RDF
1	Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Yuan-Fang Wang	Automated Protein Classification Using Consensus Decision.	CSB	2004	DBLP DOI BibTeX RDF	decision trees, protein classification, SCOP
1	Dongqing Liu, Ting Shi, Joseph A. DiDonato, John D. Carpten, Jianping Zhu, Zhong-Hui Duan	Application of a Genetic Algorithm/K-Nearest Neighbor Method to the Classification of Renal Cell Carcinoma.	CSB	2004	DBLP DOI BibTeX RDF
1	Francisca Zanoguera, Massimo de Francesco	Protein Classification into Domains of Life Using Markov Chain Models.	CSB	2004	DBLP DOI BibTeX RDF
1	Shoko Miyake, Yoichi Takenaka, Hideo Matsuda	A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile.	CSB	2004	DBLP DOI BibTeX RDF
1	Tomonori Izumitani, Hirotoshi Taira, Hideto Kazawa, Eisaku Maeda	Assigning Gene Ontology Categories (GO) to Yeast Genes Using Text-Based Supervised Learning Methods.	CSB	2004	DBLP DOI BibTeX RDF
1	Yonghua Han, Bin Ma 0002, Kaizhong Zhang	SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error.	CSB	2004	DBLP DOI BibTeX RDF	de novo sequencing, sequence tags, database search, protein identification
1	Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger	Quantitative Analysis of Membrane Protein Localization and Signaling.	CSB	2004	DBLP DOI BibTeX RDF
1	Sach Mukherjee, Stephen J. Roberts	A Theoretical Analysis of Gene Selection.	CSB	2004	DBLP DOI BibTeX RDF
1	Pei Wang, Young Kim, Jonathan R. Pollack, Robert Tibshirani	Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer.	CSB	2004	DBLP DOI BibTeX RDF
1	Russell Schwartz	Algorithms for Association Study Design Using a Generalized Model of Haplotype Conservation.	CSB	2004	DBLP DOI BibTeX RDF
1	Paul S. Meltzer, Sean R. Davis, Kristin Baird, Yidong Chen	Are We There Yet? Genomic Profiling and Mechanism in Cancer Research.	CSB	2004	DBLP DOI BibTeX RDF
1	Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama	Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns.	CSB	2004	DBLP DOI BibTeX RDF
1	Boris Budagyan, Ann E. Loraine	Gene Length and Alternative Transcription in Fruit Fly.	CSB	2004	DBLP DOI BibTeX RDF
1	Weihong Qi, David W. Lacher, Alyssa C. Bumbaugh, Katie E. Hyma, Lindsey M. Ouellette, Teresa M. Large, Cheryl L. Tarr, Thomas S. Whittam	EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coli.	CSB	2004	DBLP DOI BibTeX RDF
1	Kohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda	Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications.	CSB	2004	DBLP DOI BibTeX RDF
1	Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna	Multiple Alignment of Rearranged Genomes.	CSB	2004	DBLP DOI BibTeX RDF
1	Ruiqi Wang, Junya Nakai, Mitsuyasu Seo, Luonan Chen	Designing Synthetic Biological Systems by Multiple Time Scale Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Jian Liu, Ming Li 0001	Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists.	CSB	2004	DBLP DOI BibTeX RDF

Publications at "CSB"( http://dblp.L3S.de/Venues/CSB )