Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Haifeng Li 0012, Keshu Zhang, Tao Jiang 0001 |
Robust and Accurate Cancer Classification with Gene Expression Profiling. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Mellor-Crummey |
Reconstructing Phylogenetic Networks Using Maximum Parsimony. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
phylogenetic networks, maximum parsimony, horizontal gene transfer |
1 | Yuji Kawada, Yasubumi Sakakibara |
Discriminative Discovery of Transcription Factor Binding Sites from Location Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | |
Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2005, Stanford, CA, USA, August 8-11, 2005 |
CSB |
2005 |
DBLP BibTeX RDF |
|
1 | Jinbo Xu, Feng Jiao, Bonnie Berger |
A Tree-Decomposition Approach to Protein Structure Prediction. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Tu Minh Phuong, Zhen Lin, Russ B. Altman |
Choosing SNPs Using Feature Selection. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Chengyong Yang, Erliang Zeng, Tao Li 0001, Giri Narasimhan |
Clustering Genes Using Gene Expression and Text Literature Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
Biological Literature, Multi-Source Clustering, Text Mining, Gene Expression Data |
1 | Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos |
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | |
BioSPICE and Use Cases. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Pengjun Pei, Aidong Zhang |
A Topological Measurement for Weighted Protein Interaction Network. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
weighted graph model, topological measurement, data integration, Protein-protein interaction, small world network, protein interaction network |
1 | |
Committees. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Feng Gao 0016, Mohammed Javeed Zaki |
PSIST: Indexing Protein Structures Using Suffix Trees. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Michael Ashburner |
Ontologies for Biologists - A Community Model for the Annotation of Genomic Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai |
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
RNA secondary structure profiling, Pseudo-knot search, Covariance model, Tree decomposition |
1 | Lincong Wang, Ramgopal R. Mettu, Bruce Randall Donald |
An Algebraic Geometry Approach to Protein Structure Determination from NMR Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Rui Mao 0001, Weijia Xu, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker |
On Optimizing Distance-Based Similarity Search for Biological Databases. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Will Sheffler, Eli Upfal, John Sedivy, William Stafford Noble |
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
support vector machine, microarrays, gene expression |
1 | Benjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable |
Consensus Genetic Maps: A Graph Theoretic Approach. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Mohammed I. Rafiq, Martin J. O'Connor, Amar K. Das |
Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
temporal pattern recognition, statistical aggregation, biomedical genomics, HIV genotype testing |
1 | Aswath Manohar, Serafim Batzoglou |
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Anantharaman Kalyanaraman, Srinivas Aluru |
Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Changyu Shen, Lang Li 0001, Jake Yue Chen |
Discover True Association Rates in Multi-protein Complex Proteomics Data Sets. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Zhong Chen, Ying Xu |
Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Gabriela Alexe, Gyan Bhanot, Babu Venkataraghavan, Ramakrishna Ramaswamy, Jorge Lepre, Arnold J. Levine, Gustavo Stolovitzky |
A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Susan L. Havre, Bobbie-Jo M. Webb-Robertson, Anuj R. Shah, Christian Posse, Banu Gopalan, Fred J. Brockman |
Bioinformatic Insights from Metagenomics through Visualization. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
visualization, bioinformatics, categorical, metagenomics, nominal |
1 | |
BioImage Data Mining and Informatics. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield, Eric Mjolsness |
Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Peter M. Kasson, Mark M. Davis, Axel T. Brünger |
Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini |
Analysis of SNP-Expression Association Matrices. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | R. Nigam, S. Liang |
A Pivoting Algorithm for Metabolic Networks in the Presence of Thermodynamic Constraints. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner |
Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Nalini Polavarapu, Shamkant B. Navathe, Ramprasad Ramnarayanan, Abrar ul Haque, Saurav Sahay, Ying Liu 0007 |
Investigation into Biomedical Literature Classification Using Support Vector Machines. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | |
Referees. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Ron Kikinis |
The National Alliance for Medical Imaging Computing (NA-MIC). |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Ravi Vijaya Satya, Amar Mukherjee |
An Efficient Algorithm for Perfect Phylogeny Haplotyping. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Russ B. Altman |
Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | |
Preface. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble |
Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | |
Controlling Complexity. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail |
Islands of Tractability for Parsimony Haplotyping. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
approximation algorithm, complexity, fixed parameter tractability, genotype, parsimony, Haplotype inference |
1 | Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble |
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
charge state, machine learning, support vector machine, proteomics, mass spectrometry |
1 | Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, David Horn |
Motif Extraction and Protein Classification. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
motif extraction, enzyme classification |
1 | Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi |
Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Zheng Yun, Kwoh Chee Keong 0001 |
Identifying Simple Discriminatory Gene Vectors with an Information Theory Approach. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Arthur W. Toga |
The Center for Computational Biology. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu 0001 |
Accurate Prediction of Orthologous Gene Groups in Microbes. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Sun Kim, Jeong-Hyeon Choi, Jiong Yang |
Gene Teams with Relaxed Proximity Constraint. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Lincong Wang, Bruce Randall Donald |
An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Xutao Deng, Huimin Geng, Hesham H. Ali |
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks. |
CSB |
2005 |
DBLP DOI BibTeX RDF |
gene function prediction, machine learning, Bayesian network, yeast |
1 | Greg Knowles, Paul Gardner-Stephen |
A New Hardware Architecture for Genomic and Proteomic Sequence Alignment. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Fang-Xiang Wu, Wen-Jun Zhang 0001, Anthony J. Kusalik |
State-Space Model for Gene Regulatory Networks with Time Delays. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Hee Young Kang, Hak Yong Kim |
Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces Cerevisiae. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang 0001, Ying Xu 0001 |
Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Weimin Feng, Gaurav Tuteja, May D. Wang |
EGOMinor: A Genomics and Proteomics Data Computation and Interpretation System for Biomedical Applications. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Anguraj Sadanandam, Michelle L. Varney, Rakesh K. Singh |
High-Throughput Computational and Experimental Biology Strategy in Identifying Tumor Expressing CAMs. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Hong Liu, Li Li, Asher Zilberstein, Chang S. Hahn |
Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
segmental duplication, deubiquitinating enzyme |
1 | Lei Chen, Shiyong Lu, Jeffrey L. Ram |
Compressed Pattern Matching in DNA Sequences. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Daniel Quest, Hesham H. Ali |
Ontology Specific Data Mining Based on Dynamic Grammars. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Shiming Dong, Eileen T. Kraemer |
Calculation, Visualization, and Manipulation of MASTs (Maximum Agreement Subtrees). |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | |
3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004 |
CSB |
2004 |
DBLP BibTeX RDF |
|
1 | Xutao Deng, Hesham H. Ali |
A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Robert C. Edgar |
MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang |
Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Yasuo Matsuyama, Ryo Kawamura |
Promoter Recognition for E. coli DNA Segments by Independent Component Analysis. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Haifeng Li 0012, Keshu Zhang, Tao Jiang 0001 |
Minimum Entropy Clustering and Applications to Gene Expression Analysis. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Vineet Bafna, Shaojie Zhang |
FastR: Fast Database Search Tool for Non-Coding RNA. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search |
1 | Karuturi R. Krishna Murthy, Liu Jian Hua |
Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
Fourier transform, Microarray, Cell cycle, Gene prediction |
1 | Terrence S. T. Mak, Kai-Pui Lam |
Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Zemin Ning, William Spooner, Adam Spargo, Steven Leonard, Mark Rae, Antony J. Cox |
The SSAHA Trace Server. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Andrey Gorin, Robert M. Day, Andrey Borziak, Michael B. Strader, Gregory B. Hurst, Tema Fridman |
Probability Profile Method - New Approach to Data Analysis in Tandem Mass Spectrometry. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu 0001 |
Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Xuanfu Wu, Zhengxin Chen |
Recognition of Exon/Intron Boundaries Using Dynamic Ensembles. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Sarah E. Boyd, Maria J. García de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy |
PoPS: A Computational Tool for Modeling and Predicting Protease Specificity. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Yan Ding, Hong Cao, Shu Wen |
VirusFinder: A Web-Based Virus Identification System Using Viral Nucleotide Signatures. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Alexandre Tchourbanov, Hesham H. Ali, Jitender S. Deogun |
Using Enhancing Signals to Improve Specificity of ab initio Splice Site Sensors. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
ab initio methods, donor, acceptor, splicing enhancer, splicing silencer |
1 | Geoffrey Yang, Ming-Hsiu Ho, Earl Hubbell |
High-Throughput Microarray-Based Genotyping. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Sumeet Dua, Naveen Kandiraju |
A Novel Computational Framework for Structural Classification of Proteins Using Local Geometric Parameter Matching. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Tie Wang, Jeffrey W. Touchman, Guoliang Xue |
Applying Two-Level Simulated Annealing on Bayesian Structure Learning to Infer Genetic Networks. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Yuhang Wang, Fillia Makedon |
Application of Relief-F Feature Filtering Algorithm to Selecting Informative Genes for Cancer Classification Using Microarray Data. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | K. Arun, Christopher James Langmead |
Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Fei Nan, Donald A. Adjeroh |
On Complexity Measures for Biological Sequences. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Ying Liu 0007, Brian J. Ciliax, Karin Borges, Venu Dasigi, Ashwin Ram 0001, Shamkant B. Navathe, Ray Dingledine |
Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene Clustering. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Yuan-Fang Wang |
Automated Protein Classification Using Consensus Decision. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
decision trees, protein classification, SCOP |
1 | Dongqing Liu, Ting Shi, Joseph A. DiDonato, John D. Carpten, Jianping Zhu, Zhong-Hui Duan |
Application of a Genetic Algorithm/K-Nearest Neighbor Method to the Classification of Renal Cell Carcinoma. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Francisca Zanoguera, Massimo de Francesco |
Protein Classification into Domains of Life Using Markov Chain Models. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Shoko Miyake, Yoichi Takenaka, Hideo Matsuda |
A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic Profile. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Tomonori Izumitani, Hirotoshi Taira, Hideto Kazawa, Eisaku Maeda |
Assigning Gene Ontology Categories (GO) to Yeast Genes Using Text-Based Supervised Learning Methods. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Yonghua Han, Bin Ma 0002, Kaizhong Zhang |
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
de novo sequencing, sequence tags, database search, protein identification |
1 | Peter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger |
Quantitative Analysis of Membrane Protein Localization and Signaling. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Sach Mukherjee, Stephen J. Roberts |
A Theoretical Analysis of Gene Selection. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Pei Wang, Young Kim, Jonathan R. Pollack, Robert Tibshirani |
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Russell Schwartz |
Algorithms for Association Study Design Using a Generalized Model of Haplotype Conservation. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Paul S. Meltzer, Sean R. Davis, Kristin Baird, Yidong Chen |
Are We There Yet? Genomic Profiling and Mechanism in Cancer Research. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama |
Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Boris Budagyan, Ann E. Loraine |
Gene Length and Alternative Transcription in Fruit Fly. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Weihong Qi, David W. Lacher, Alyssa C. Bumbaugh, Katie E. Hyma, Lindsey M. Ouellette, Teresa M. Large, Cheryl L. Tarr, Thomas S. Whittam |
EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coli. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Kohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda |
Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional Classifications. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna |
Multiple Alignment of Rearranged Genomes. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Ruiqi Wang, Junya Nakai, Mitsuyasu Seo, Luonan Chen |
Designing Synthetic Biological Systems by Multiple Time Scale Networks. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Jian Liu, Ming Li 0001 |
Finding Cancer Biomarkers from Mass Spectrometry Data by Decision Lists. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
|