Search results for "ISMB"

Hits ?▲	Authors	Title	Venue	Year	Link
1	Kenneth McLeod, Albert Burger	Towards the use of argumentation in bioinformatics: a gene expression case study.	ISMB	2008	DBLP DOI BibTeX RDF
1	Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller 0001	Identifying functional modules in protein-protein interaction networks: an integrated exact approach.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yiqun Cao, Tao Jiang 0001, Thomas Girke	A maximum common substructure-based algorithm for searching and predicting drug-like compounds.	ISMB	2008	DBLP DOI BibTeX RDF
1	Chun-Nan Hsu, Yu-Ming Chang, Cheng-Ju Kuo, Yu-Shi Lin, Han-Shen Huang, I-Fang Chung	Integrating high dimensional bi-directional parsing models for gene mention tagging.	ISMB	2008	DBLP DOI BibTeX RDF
1	Moran Yassour, Tommy Kaplan, Ariel Jaimovich, Nir Friedman	Nucleosome positioning from tiling microarray data.	ISMB	2008	DBLP DOI BibTeX RDF
1	Joshua Wing Kei Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston	Differential variability analysis of gene expression and its application to human diseases.	ISMB	2008	DBLP DOI BibTeX RDF
1	Sean McIlwain, David Page, Edward L. Huttlin, Michael R. Sussman	Matching isotopic distributions from metabolically labeled samples.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yuan Wang, Xiaobo Zhou 0001, Honghui Wang, King C. Li, Lixiu Yao, Stephen T. C. Wong	Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model.	ISMB	2008	DBLP DOI BibTeX RDF
1	Ashley Vaughan, Sum-Ying Chiu, Gowthaman Ramasamy, Ling Li, Malcolm J. Gardner, Alice S. Tarun, Stefan H. I. Kappe, Xinxia Peng	Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis.	ISMB	2008	DBLP DOI BibTeX RDF
1	Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph	Alignment and classification of time series gene expression in clinical studies.	ISMB	2008	DBLP DOI BibTeX RDF
1	Fei Xiong, Gopal Pandurangan, Chris Bailey-Kellogg	Contact replacement for NMR resonance assignment.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa	Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.	ISMB	2008	DBLP DOI BibTeX RDF
1	Curtis Huttenhower, Olga G. Troyanskaya	Assessing the functional structure of genomic data.	ISMB	2008	DBLP DOI BibTeX RDF
1	Seunghak Lee, Elango Cheran, Michael Brudno	A robust framework for detecting structural variations in a genome.	ISMB	2008	DBLP DOI BibTeX RDF
1	Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders	Combinatorial influence of environmental parameters on transcription factor activity.	ISMB	2008	DBLP DOI BibTeX RDF
1	Chunfang Zheng, Qian Zhu 0002, Zaky Adam, David Sankoff	Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial	Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.	ISMB	2008	DBLP DOI BibTeX RDF
1	Simon Wong, Mark A. Ragan	MACHOS: Markov clusters of homologous subsequences.	ISMB	2008	DBLP DOI BibTeX RDF
1	Pierre Baldi, Ryan W. Benz	BLASTing small molecules - statistics and extreme statistics of chemical similarity scores.	ISMB	2008	DBLP DOI BibTeX RDF
1	Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep	Inferring differentiation pathways from gene expression.	ISMB	2008	DBLP DOI BibTeX RDF
1	Mukul S. Bansal, Oliver Eulenstein	The multiple gene duplication problem revisited.	ISMB	2008	DBLP DOI BibTeX RDF
1	Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp	Biomolecular network motif counting and discovery by color coding.	ISMB	2008	DBLP DOI BibTeX RDF
1	Ivelin Georgiev, Daniel A. Keedy, Jane S. Richardson, David C. Richardson, Bruce Randall Donald	Algorithm for backrub motions in protein design.	ISMB	2008	DBLP DOI BibTeX RDF
1		ISMB 2008 Organization.	ISMB	2008	DBLP DOI BibTeX RDF
1	Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu	The effectiveness of position- and composition-specific gap costs for protein similarity searches.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yu Lin 0001, Bernard M. E. Moret	Estimating true evolutionary distances under the DCJ model.	ISMB	2008	DBLP DOI BibTeX RDF
1	Chuong B. Do, Chuan-Sheng Foo, Serafim Batzoglou	A max-margin model for efficient simultaneous alignment and folding of RNA sequences.	ISMB	2008	DBLP DOI BibTeX RDF
1	Alfonso Valencia, Ildefonso Cases	Editorial.	ISMB	2008	DBLP DOI BibTeX RDF
1	Lucas D. Ward, Harmen J. Bussemaker	Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.	ISMB	2008	DBLP DOI BibTeX RDF
1	Larisa N. Soldatova, Wayne Aubrey, Ross D. King, Amanda Clare	The EXACT description of biomedical protocols.	ISMB	2008	DBLP DOI BibTeX RDF
1	Minzhu Xie, Jianxin Wang 0001, Jianer Chen	A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors.	ISMB	2008	DBLP DOI BibTeX RDF
1	Menachem Fromer, Chen Yanover	A computational framework to empower probabilistic protein design.	ISMB	2008	DBLP DOI BibTeX RDF
1	Roman Klinger, Corinna Kolárik, Juliane Fluck, Martin Hofmann-Apitius, Christoph M. Friedrich	Detection of IUPAC and IUPAC-like chemical names.	ISMB	2008	DBLP DOI BibTeX RDF
1	Cuong Than, R. Sugino, Hideki Innan, Luay Nakhleh	Efficient inference of bacterial strain trees from genome-scale multilocus data.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yunpen Xu, Xuefeng Zhou, Weixiong Zhang	MicroRNA prediction with a novel ranking algorithm based on random walks.	ISMB	2008	DBLP DOI BibTeX RDF
1	Jun Liu, Sanjay Ranka, Tamer Kahveci	Classification and feature selection algorithms for multi-class CGH data.	ISMB	2008	DBLP DOI BibTeX RDF
1	Sören Sonnenburg, Alexander Zien, Petra Philips, Gunnar Rätsch	POIMs: positional oligomer importance matrices - understanding support vector machine-based signal detectors.	ISMB	2008	DBLP DOI BibTeX RDF
1	Frédéric Lemoine 0002, Bernard Labedan, Christine Froidevaux	GenoQuery: a new querying module for functional annotation in a genomic warehouse.	ISMB	2008	DBLP DOI BibTeX RDF
1	Shuai Cheng Li 0001, Dongbo Bu, Xin Gao 0001, Jinbo Xu, Ming Li 0001	Designing succinct structural alphabets.	ISMB	2008	DBLP DOI BibTeX RDF
1	Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanç Birol	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.	ISMB	2008	DBLP DOI BibTeX RDF
1	Franck Rapaport, Emmanuel Barillot, Jean-Philippe Vert	Classification of arrayCGH data using fused SVM.	ISMB	2008	DBLP DOI BibTeX RDF
1	Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer	ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.	ISMB	2008	DBLP DOI BibTeX RDF
1	Arzucan Özgür, Thuy Vu, Günes Erkan, Dragomir R. Radev	Identifying gene-disease associations using centrality on a literature mined gene-interaction network.	ISMB	2008	DBLP DOI BibTeX RDF
1	Nuno Bandeira, Jesper V. Olsen, Matthias Mann 0002, Pavel A. Pevzner	Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.	ISMB	2008	DBLP DOI BibTeX RDF
1	Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph	Protein complex identification by supervised graph local clustering.	ISMB	2008	DBLP DOI BibTeX RDF
1	Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio	Predicting protein thermostability changes from sequence upon multiple mutations.	ISMB	2008	DBLP DOI BibTeX RDF
1	Michal Rosen-Zvi, André Altmann, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer	Selecting anti-HIV therapies based on a variety of genomic and clinical factors.	ISMB	2008	DBLP DOI BibTeX RDF
1	Stefan Schulz 0001, Holger Stenzhorn, Martin Boeker	The ontology of biological taxa.	ISMB	2008	DBLP DOI BibTeX RDF
1	Thomas J. Lee, Ian T. Paulsen, Peter D. Karp	Annotation-based inference of transporter function.	ISMB	2008	DBLP DOI BibTeX RDF
1	Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble	Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.	ISMB	2008	DBLP DOI BibTeX RDF
1	Peter J. Park, Lu Tian, Isaac S. Kohane	Linking gene expression data with patient survival times using partial least squares.	ISMB	2002	DBLP BibTeX RDF
1	Dirk Husmeier, Gráinne McGuire	Detecting recombination with MCMC.	ISMB	2002	DBLP BibTeX RDF
1	Rohan J. Fernandes, Steven Skiena	Microarray synthesis through multiple-use PCR primer design.	ISMB	2002	DBLP BibTeX RDF
1	Jean-Philippe Vert	A tree kernel to analyse phylogenetic profiles.	ISMB	2002	DBLP BibTeX RDF
1	Dana Pe'er, Aviv Regev, Amos Tanay	Minreg: Inferring an active regulator set.	ISMB	2002	DBLP BibTeX RDF
1	Mujahid Sultan, Dennis A. Wigle, Christian A. Cumbaa, Marlena Maziarz, Janice I. Glasgow, Ming-Sound Tsao, Igor Jurisica	Binary tree-structured vector quantization approach to clustering and visualizing microarray data.	ISMB	2002	DBLP BibTeX RDF
1	Dmitry Korkin, Lev Goldfarb	Multiple genome rearrangement: a general approach via the evolutionary genome graph.	ISMB	2002	DBLP BibTeX RDF
1	Nicholas R. Steffen, S. D. Murphy, L. Tolleri, G. Wesley Hatfield, Richard H. Lathrop	DNA sequence and structure: direct and indirect recognition in protein-DNA binding.	ISMB	2002	DBLP BibTeX RDF
1	Chris Bystroff, Yu Shao	Fully automated ab initio protein structure prediction using I-STES, HMMSTR and ROSETTA.	ISMB	2002	DBLP BibTeX RDF
1	V. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink	Evaluating functional network inference using simulations of complex biological systems.	ISMB	2002	DBLP BibTeX RDF
1	Fabian Model, Thomas König, Christian Piepenbrock, Péter Adorján	Statistical process control for large scale microarray experiments.	ISMB	2002	DBLP BibTeX RDF
1	Kyungsook Han, Yujin Lee, Wootaek Kim	PseudoViewer: automatic visualization of RNA pseudoknots.	ISMB	2002	DBLP BibTeX RDF
1	J. B. Tobler, Michael Molla, Emile F. Nuwaysir, R. D. Green, Jude W. Shavlik	Evaluating machine learning approaches for aiding probe selection for gene-expression arrays.	ISMB	2002	DBLP BibTeX RDF
1	Cara Stockham, Li-San Wang, Tandy J. Warnow	Statistically based postprocessing of phylogenetic analysis by clustering.	ISMB	2002	DBLP BibTeX RDF
1	Irene M. Ong, Jeremy D. Glasner, David Page	Modelling regulatory pathways in E. coli from time series expression profiles.	ISMB	2002	DBLP BibTeX RDF
1	Michael Höhl, Stefan Kurtz, Enno Ohlebusch	Efficient multiple genome alignment.	ISMB	2002	DBLP BibTeX RDF
1	Chaim Linhart, Ron Shamir	The degenerate primer design problem.	ISMB	2002	DBLP BibTeX RDF
1	Amy M. Hauth, Deborah Joseph	Beyond tandem repeats: complex pattern structures and distant regions of similarity.	ISMB	2002	DBLP BibTeX RDF
1	Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky	Of truth and pathways: chasing bits of information through myriads of articles.	ISMB	2002	DBLP BibTeX RDF
1	Amos Tanay, Roded Sharan, Ron Shamir	Discovering statistically significant biclusters in gene expression data.	ISMB	2002	DBLP BibTeX RDF
1	Rajesh Nair, Burkhard Rost	Inferring sub-cellular localization through automated lexical analysis.	ISMB	2002	DBLP BibTeX RDF
1	Michael J. Wise	The POPPs: clustering and searching using peptide probability profiles.	ISMB	2002	DBLP BibTeX RDF
1	Gianluca Pollastri, Pierre Baldi	Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.	ISMB	2002	DBLP BibTeX RDF
1	Daniel P. Fasulo, Aaron L. Halpern, Ian M. Dew, Clark M. Mobarry	Efficiently detecting polymorphisms during the fragment assembly process.	ISMB	2002	DBLP BibTeX RDF
1	Peter D. Karp, Suzanne M. Paley, Pedro Romero	The Pathway Tools software.	ISMB	2002	DBLP BibTeX RDF
1	Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron	Variance stabilization applied to microarray data calibration and to the quantification of differential expression.	ISMB	2002	DBLP BibTeX RDF
1	Brian Tjaden, David R. Haynor, Sergey Stolyar, Carsten Rosenow, Eugene Kolker	Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis.	ISMB	2002	DBLP BibTeX RDF
1	Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner	Splicing graphs and EST assembly problem.	ISMB	2002	DBLP BibTeX RDF
1	Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman	Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models.	ISMB	2002	DBLP BibTeX RDF
1	Maáyan Fishelson, Dan Geiger	Exact genetic linkage computations for general pedigrees.	ISMB	2002	DBLP BibTeX RDF
1	Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio	A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.	ISMB	2002	DBLP BibTeX RDF
1	Ori Sasson, Nathan Linial, Michal Linial	The metric space of proteins-comparative study of clustering algorithms.	ISMB	2002	DBLP BibTeX RDF
1	Ajit Narayanan, Xikun Wu, Zheng Rong Yang	Mining viral protease data to extract cleavage knowledge.	ISMB	2002	DBLP BibTeX RDF
1	Koji Tsuda, Taishin Kin, Kiyoshi Asai	Marginalized kernels for biological sequences.	ISMB	2002	DBLP BibTeX RDF
1	Ekaterina M. Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz	Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns.	ISMB	2002	DBLP BibTeX RDF
1	Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal	Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.	ISMB	2002	DBLP BibTeX RDF
1	Eleazar Eskin, Pavel A. Pevzner	Finding composite regulatory patterns in DNA sequences.	ISMB	2002	DBLP BibTeX RDF
1	Blythe Durbin, Johanna S. Hardin, Douglas M. Hawkins, David M. Rocke	A variance-stabilizing transformation for gene-expression microarray data.	ISMB	2002	DBLP BibTeX RDF
1	Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel	Discovering regulatory and signalling circuits in molecular interaction networks.	ISMB	2002	DBLP BibTeX RDF
1	Janice I. Glasgow, Burkhard Rost	ISMB 2002	ISMB	2002	DBLP BibTeX RDF
1	Gabriel Moreno-Hagelsieb, Julio Collado-Vides	A powerful non-homology method for the prediction of operons in prokaryotes.	ISMB	2002	DBLP BibTeX RDF
1	Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer	Co-clustering of biological networks and gene expression data.	ISMB	2002	DBLP BibTeX RDF
1	Teemu Kivioja, Mikko Arvas, Kari Kataja, Merja Penttilä, Hans Söderlund, Esko Ukkonen	Assigning probes into a small number of pools separable by electrophoresis.	ISMB	2002	DBLP BibTeX RDF
1	Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen	Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.	ISMB	2000	DBLP BibTeX RDF
1	Mark W. Craven, David Page, Jude W. Shavlik, Joseph Bockhorst, Jeremy D. Glasner	A Probabilistic Learning Approach to Whole-Genome Operon Prediction.	ISMB	2000	DBLP BibTeX RDF
1	Vanathi Gopalakrishnan, Bruce G. Buchanan, John M. Rosenberg	Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization.	ISMB	2000	DBLP BibTeX RDF
1	Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy J. Warnow, Stacia K. Wyman	A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data.	ISMB	2000	DBLP BibTeX RDF
1	Roded Sharan, Ron Shamir	Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis.	ISMB	2000	DBLP BibTeX RDF
1	Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer	Analysis of Gene Expression Data with Pathway Scores.	ISMB	2000	DBLP BibTeX RDF
1	Rainer Spang, Marc Rehmsmeier, Jens Stoye	Sequence Database Search Using Jumping Alignments.	ISMB	2000	DBLP BibTeX RDF

Publications at "ISMB"( http://dblp.L3S.de/Venues/ISMB )