| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy |
Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem.  |
WABI  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Front Matter, Table of Contents, Preface, Conference Organization. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jamshed Khan, Tobias Rubel, Laxman Dhulipala, Erin K. Molloy, Rob Patro |
Fast, Parallel, and Cache-Friendly Suffix Array Construction. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Shayesteh Arasti, Siavash Mirarab |
Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Teresa M. Przytycka |
Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk). |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Leo van Iersel, Mark Jones 0001, Esther Julien, Yukihiro Murakami |
Making a Network Orchard by Adding Leaves. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Eleanor Wedell, Chengze Shen, Tandy J. Warnow |
BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract). |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tizian Schulz, Paul Medvedev |
Exact Sketch-Based Read Mapping. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicola Rizzo 0001, Manuel Cáceres, Veli Mäkinen |
Finding Maximal Exact Matches in Graphs. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pawel Górecki 0001, Natalia Rutecka, Agnieszka Mykowiecka 0002, Jaroslaw Paszek |
Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohsen Ferdosi, Yuejun Ge, Carl Kingsford |
Reinforcement Learning for Robotic Liquid Handler Planning. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yutong Qiu, Yihang Shen, Carl Kingsford |
Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro |
Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow |
EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract). |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Djamal Belazzougui, Aïda Ouangraoua (eds.) |
23rd International Workshop on Algorithms in Bioinformatics, WABI 2023, September 4-6, 2023, Houston, TX, USA |
WABI |
2023 |
DBLP BibTeX RDF |
|
| 1 | Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset |
Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir |
Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal RNA Design. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain |
Co-Linear Chaining on Pangenome Graphs. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Leonard Bohnenkämper |
Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Amatur Rahman, Yoann Dufresne, Paul Medvedev |
Compression Algorithm for Colored de Bruijn Graphs. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yunheng Han, Erin K. Molloy |
Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract). |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mateo Gray, Sebastian Will, Hosna Jabbari |
SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie |
Acceleration of FM-Index Queries Through Prefix-Free Parsing. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Théo Boury, Yann Ponty, Vladimir Reinharz |
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir |
Inferring Temporally Consistent Migration Histories. |
WABI |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sebastian S. Schmidt, Jarno N. Alanko |
Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye |
A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru |
Feasibility of Flow Decomposition with Subpath Constraints in Linear Time. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Laurent Bulteau, Yann Ponty |
Automated Design of Dynamic Programming Schemes for RNA Folding with Pseudoknots. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wei Wei, David Koslicki |
WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Clément Agret, Bastien Cazaux, Antoine Limasset |
Toward Optimal Fingerprint Indexing for Large Scale Genomics. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Eden Ozery, Meirav Zehavi, Michal Ziv-Ukelson |
New Algorithms for Structure Informed Genome Rearrangement. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshihiko Suzuki, Gene Myers |
Accurate k-mer Classification Using Read Profiles. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Konstantinn Bonnet, Tobias Marschall, Daniel Doerr |
Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jens Zentgraf, Sven Rahmann |
Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Ke Chen 0011, Mingfu Shao |
Locality-Sensitive Bucketing Functions for the Edit Distance. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Giulio Ermanno Pibiri |
On Weighted k-mer Dictionaries. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Mathieu Gascon, Nadia El-Mabrouk |
Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zsuzsanna Lipták, Francesco Masillo, Simon J. Puglisi |
Suffix Sorting via Matching Statistics. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov |
Efficient Reconciliation of Genomic Datasets of High Similarity. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Taher Mun, Naga Sai Kavya Vaddadi, Ben Langmead |
Pangenomic Genotyping with the Marker Array. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Pijus Simonaitis, Benjamin J. Raphael |
A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Adrián Goga, Andrej Baláz |
Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Alitzel López Sánchez, Manuel Lafond |
Predicting Horizontal Gene Transfers with Perfect Transfer Networks. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Diego P. Rubert, Marília D. V. Braga |
Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Baqiao Liu, Tandy J. Warnow |
Fast and Accurate Species Trees from Weighted Internode Distances. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Giulia Bernardini 0001, Leo van Iersel, Esther Julien, Leen Stougie |
Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Christina Boucher, Sven Rahmann (eds.) |
22nd International Workshop on Algorithms in Bioinformatics, WABI 2022, September 5-7, 2022, Potsdam, Germany. |
WABI |
2022 |
DBLP BibTeX RDF |
|
| 1 | Ahsan Sanaullah, Degui Zhi, Shaoije Zhang |
Haplotype Threading Using the Positional Burrows-Wheeler Transform. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Veronica Guerrini, Alessio Conte, Roberto Grossi, Gianni Liti, Giovanna Rosone, Lorenzo Tattini |
phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering. |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Leena Salmela |
Efficient Solutions to Biological Problems Using de Bruijn Graphs (Invited Talk). |
WABI |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic |
BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Matthew LeMay, Yi-Chieh Wu, Ran Libeskind-Hadas |
The Most Parsimonious Reconciliation Problem in the Presence of Incomplete Lineage Sorting and Hybridization Is NP-Hard. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Brandon Jew, Jiajin Li, Sriram Sankararaman, Jae Hoon Sul |
An Efficient Linear Mixed Model Framework for Meta-Analytic Association Studies Across Multiple Contexts. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi |
Efficient Haplotype Block Matching in Bi-Directional PBWT. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Lucia Williams, Alexandru I. Tomescu, Brendan Mumey |
Flow Decomposition with Subpath Constraints. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Kazushi Kitaya, Tetsuo Shibuya |
Compression of Multiple k-Mer Sets by Iterative SPSS Decomposition. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Yishu Wang 0002, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri |
Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Front Matter, Table of Contents, Preface, Conference Organization. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov |
Space-Efficient Representation of Genomic k-Mer Count Tables. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Bertrand Marchand, Yann Ponty, Laurent Bulteau |
Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolas Boria, Laurent Gourvès, Vangelis Th. Paschos, Jérôme Monnot |
The Maximum Duo-Preservation String Mapping Problem with Bounded Alphabet. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Jason Fan, Skylar Chan, Rob Patro |
Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir |
Parsimonious Clone Tree Reconciliation in Cancer. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Alessandra Carbone, Mohammed El-Kebir (eds.) |
21st International Workshop on Algorithms in Bioinformatics, WABI 2021, August 2-4, 2021, Virtual Conference. |
WABI |
2021 |
DBLP BibTeX RDF |
|
| 1 | Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka 0002, Pawel Górecki 0001 |
Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Céline Scornavacca, Mathias Weller |
Treewidth-Based Algorithms for the Small Parsimony Problem on Networks. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshiki Nakagawa, Satsuya Ohata, Kana Shimizu |
Efficient Privacy-Preserving Variable-Length Substring Match for Genome Sequence. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Ali Ebrahimpour Boroojeny, Sanjay V. Rajopadhye, Hamidreza Chitsaz |
BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Ron Zeira, Geoffrey Mon, Benjamin J. Raphael |
Genome Halving and Aliquoting Under the Copy Number Distance. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Travis Gagie, Garance Gourdel, Giovanni Manzini |
Compressing and Indexing Aligned Readsets. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Anuradha Wickramarachchi, Yu Lin 0001 |
LRBinner: Binning Long Reads in Metagenomics Datasets. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Spencer Krieger, John D. Kececioglu |
Fast Approximate Shortest Hyperpaths for Inferring Pathways in Cell Signaling Hypergraphs. |
WABI |
2021 |
DBLP DOI BibTeX RDF |
|
| 1 | Cong Ma, Hongyu Zheng 0001, Carl Kingsford |
Exact Transcript Quantification Over Splice Graphs. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin 0001 |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Amatur Rahman, Rayan Chikhi, Paul Medvedev |
Disk Compression of k-mer Sets. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Kingshuk Mukherjee, Massimiliano Rossi 0001, Leena Salmela, Christina Boucher |
Fast and Efficient Rmap Assembly Using the Bi-Labelled de Bruijn Graph. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Jens Zentgraf, Sven Rahmann |
Fast Lightweight Accurate Xenograft Sorting. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Front Matter, Table of Contents, Preface, Conference Organization. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Veli Mäkinen, Bastien Cazaux, Massimo Equi, Tuukka Norri, Alexandru I. Tomescu |
Linear Time Construction of Indexable Founder Block Graphs. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Katharina Jahn 0001, Niko Beerenwinkel, Louxin Zhang |
The Bourque Distances for Mutation Trees of Cancers. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoann Dufresne, Chen Sun 0014, Pierre Marijon, Dominique Lavenier, Cédric Chauve, Rayan Chikhi |
A Graph-Theoretic Barcode Ordering Model for Linked-Reads. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch |
An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Leonie Selbach, Tobias Kowalski, Klaus Gerwert, Maike Buchin, Axel Mosig |
Shape Decomposition Algorithms for Laser Capture Microdissection. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Galia R. Zimerman, Dina Svetlitsky, Meirav Zehavi, Michal Ziv-Ukelson |
Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Carl Kingsford, Nadia Pisanti (eds.) |
20th International Workshop on Algorithms in Bioinformatics, WABI 2020, September 7-9, 2020, Pisa, Italy (Virtual Conference). |
WABI |
2020 |
DBLP BibTeX RDF |
|
| 1 | Trevor S. Frisby, Christopher J. Langmead |
Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Leah L. Weber, Mohammed El-Kebir |
Phyolin: Identifying a Linear Perfect Phylogeny in Single-Cell DNA Sequencing Data of Tumors. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga |
Natural Family-Free Genomic Distance. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow |
Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Arun Ganesh, Aaron Sy |
Near-Linear Time Edit Distance for Indel Channels. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas Gatter, Sarah von Löhneysen, Polina Drozdova, Tom Hartmann, Peter F. Stadler |
Economic Genome Assembly from Low Coverage Illumina and Nanopore Data. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Sven Schrinner, Manish Goel, Michael Wulfert, Philipp Spohr, Korbinian Schneeberger, Gunnar W. Klau |
The Longest Run Subsequence Problem. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Domenico Cantone, Simone Faro, Arianna Pavone |
Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced Translocations. |
WABI |
2020 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexey Markin, Oliver Eulenstein |
Consensus Clusters in Robinson-Foulds Reticulation Networks. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohammad Amin Edrisi, Hamim Zafar, Luay Nakhleh |
A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Evgeny Polevikov, Mikhail Kolmogorov |
Synteny Paths for Assembly Graphs Comparison. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Nathan L. Clement |
Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Pijus Simonaitis, Annie Chateau, Krister M. Swenson |
Weighted Minimum-Length Rearrangement Scenarios. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Katharina T. Huber, Dan Gusfield (eds.) |
19th International Workshop on Algorithms in Bioinformatics, WABI 2019, September 8-10, 2019, Niagara Falls, NY, USA. |
WABI |
2019 |
DBLP BibTeX RDF |
|
![[Valid RSS]](Pics/valid-rss.png "Validate my RSS feed")
data released under the ODC-BY 1.0 license