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Found 3721 publication records. Showing 3721 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | |
Correction to: DeepFormer: a hybrid network based on convolutional neural network and flow-attention mechanism for identifying the function of DNA sequences.  |
Briefings Bioinform.  |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yue Guo, Haitao Hu, Wenbo Chen, Hao Yin, Jian Wu, Chang-Yu Hsieh, Qiaojun He, Ji Cao |
SynergyX: a multi-modality mutual attention network for interpretable drug synergy prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xing Chen 0001, Li Huang |
Computational model for drug research. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Qiuchen Meng, Lei Wei, Kun Ma, Ming Shi, Xinyi Lin, Joshua W. K. Ho, Yinqing Li, Xuegong Zhang |
scDecouple: decoupling cellular response from infected proportion bias in scCRISPR-seq. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Tram Huynh, Zixuan Cang |
Topological and geometric analysis of cell states in single-cell transcriptomic data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Adam Wright, Mark D. Wilkinson, Christopher J. Mungall, Scott Cain, Stephen Richards, Paul W. Sternberg, Ellen Provin, Jonathan L. Jacobs, Scott Geib, Daniela Raciti, Karen Yook, Lincoln Stein, David C. Molik |
FAIR Header Reference genome: a TRUSTworthy standard. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Seokjin Han, Ji Eun Lee, Seolhee Kang, Minyoung So, Hee Jin, Jang Ho Lee, Sunghyeob Baek, Hyungjin Jun, Tae Yong Kim, Yun-Sil Lee |
Standigm ASK™: knowledge graph and artificial intelligence platform applied to target discovery in idiopathic pulmonary fibrosis. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Shi Zhang, Rui Zhang 0065, Kai Yuan, Lu Yang, Chang Liu 0059, Yuting Liu, Xumin Ni, Shuhua Xu |
Reconstructing complex admixture history using a hierarchical model. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Lixin Lei, Kaitai Han, Zijun Wang, Chaojing Shi, Zhenghui Wang, Ruoyan Dai, Zhiwei Zhang, Mengqiu Wang, Qianjin Guo |
Attention-guided variational graph autoencoders reveal heterogeneity in spatial transcriptomics. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Pengyong Li, Zhengxiang Jiang, Tianxiao Liu, Xinyu Liu, Hui Qiao, Xiaojun Yao |
Improving drug response prediction via integrating gene relationships with deep learning. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Wenyuan Ma, Hui Wu, Yiran Chen 0021, Hongxia Xu, Junjie Jiang, Bang Du, Mingyu Wan, Xiaolu Ma, Xiaoyu Chen, Lili Lin, Xinhui Su, Xuanwen Bao, Yifei Shen, Nong Xu, Jian Ruan, Haiping Jiang, Yongfeng Ding |
New techniques to identify the tissue of origin for cancer of unknown primary in the era of precision medicine: progress and challenges. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Musu Yuan, Hui Wan, Zihao Wang, Qirui Guo, Minghua Deng |
SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Conghao Wang, Hiok Hian Ong, Shunsuke Chiba, Jagath C. Rajapakse |
GLDM: hit molecule generation with constrained graph latent diffusion model. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Simone Maestri, Mattia Furlan, Logan Mulroney, Lucia Coscujuela Tarrero, Camilla Ugolini, Fabio Dalla Pozza, Tommaso Leonardi, Ewan Birney, Francesco Nicassio, Mattia Pelizzola |
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jingxuan Qiu, Wanchun Nie, Hao Ding, Jia Dai, Yiwen Wei, Dezhi Li, Yuxi Zhang, Junting Xie, Xinxin Tian, Nannan Wu, Tianyi Qiu |
PB-LKS: a python package for predicting phage-bacteria interaction through local K-mer strategy. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhao Peng, Jiaqiang Li, Xingpeng Jiang, Cuihong Wan |
sOCP: a framework predicting smORF coding potential based on TIS and in-frame features and effectively applied in the human genome. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ariadna Llop-Peiró, Gerard Pujadas, Santiago Garcia-Vallvé |
Challenges in distinguishing functional proteins from polyproteins in databases: implications for drug discovery. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Mengting Niu, Chunyu Wang, Yaojia Chen, Quan Zou 0001, Lei Xu |
Identification, characterization and expression analysis of circRNA encoded by SARS-CoV-1 and SARS-CoV-2. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Hangjia Zhao, Michael Baudis |
labelSeg: segment annotation for tumor copy number alteration profiles. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Meng Wang, Chuqi Lei, Jianxin Wang 0001, Yaohang Li, Min Li 0007 |
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhen-Hao Guo, Yan-Bin Wang, Siguo Wang, Qinhu Zhang, De-Shuang Huang |
scCorrector: a robust method for integrating multi-study single-cell data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zechen Wang, Sheng Wang, Yangyang Li, Jingjing Guo, Yanjie Wei, Yuguang Mu, Liangzhen Zheng, Weifeng Li |
A new paradigm for applying deep learning to protein-ligand interaction prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao-Hong Ding, Yi Xiao, Fenfang Chen, Cheng-Lin Liu, Tong Fu, Zhi-Ming Shao, Yi-Zhou Jiang |
The HLA-I landscape confers prognosis and antitumor immunity in breast cancer. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Lu-Xiang Guo, Lei Wang 0121, Zhu-Hong You, Chang-Qing Yu, Meng-Lei Hu, Bo-Wei Zhao, Yang Li |
Likelihood-based feature representation learning combined with neighborhood information for predicting circRNA-miRNA associations. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrcela, Dimitra Sarantopoulou, Soumyashant Nayak, Amruta Naik, Shaon Sengupta, Peter S. Choi, Gregory R. Grant |
BEERS2: RNA-Seq simulation through high fidelity in silico modeling. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhenyu Wei, Chengkui Zhao, Min Zhang, Jiayu Xu, Nan Xu, Shiwei Wu, Xiaohui Xin, Lei Yu, Weixing Feng |
Meta-DHGNN: method for CRS-related cytokines analysis in CAR-T therapy based on meta-learning directed heterogeneous graph neural network. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Chen Peng, Qiong Chen, Shangjin Tan, Xiaotao Shen, Chao Jiang |
Generalized reporter score-based enrichment analysis for omics data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Wang Xu, Houfang Zhang, Wenhan Guo, Lijun Jiang, Yunjie Zhao, Yunhui Peng |
Deciphering principles of nucleosome interactions and impact of cancer-associated mutations from comprehensive interaction network analysis. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Mingshuai Chen, Mingai Sun, Xi Su, Prayag Tiwari, Yijie Ding |
Fuzzy kernel evidence Random Forest for identifying pseudouridine sites. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhen Gao, Yansen Su, Junfeng Xia, Rui-Fen Cao, Yun Ding, Chun-Hou Zheng 0001, Pi-Jing Wei |
DeepFGRN: inference of gene regulatory network with regulation type based on directed graph embedding. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Rajesh Kumar Pathak, Jun-Mo Kim 0003 |
Veterinary systems biology for bridging the phenotype-genotype gap via computational modeling for disease epidemiology and animal welfare. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jing Meng, Jingze Liu, Wenkai Song, Honglei Li, Jiangyuan Wang, Le Zhang 0004, Yousong Peng, Aiping Wu, Taijiao Jiang |
PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Qiuhao Chen, Liyuan Zhang, Yaojia Liu, Zhonghao Qin, Tianyi Zhao |
PUTransGCN: identification of piRNA-disease associations based on attention encoding graph convolutional network and positive unlabelled learning. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Chunjiang Yu, Hui Zong, Yalan Chen, Yibin Zhou, Xingyun Liu, Yuxin Lin, Jiakun Li, Xiaonan Zheng, Hua Min, Bairong Shen |
PCAO2: an ontology for integration of prostate cancer associated genotypic, phenotypic and lifestyle data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Danel Olaverri-Mendizabal, Luis Vitores Valcarcel, Naroa Barrena, Carlos J. Rodríguez, Francisco J. Planes |
Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Giovanni Visonà, Emmanuelle Bouzigon, Florence Demenais, Gabriele Beate Schweikert |
Network propagation for GWAS analysis: a practical guide to leveraging molecular networks for disease gene discovery. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Boya Ji, Haitao Zou, Liwen Xu, Xiaolan Xie, Shaoliang Peng |
MUSCLE: multi-view and multi-scale attentional feature fusion for microRNA-disease associations prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Weihang Zhang, Yang Cui, Bowen Liu, Martin Loza, Sung-Joon Park, Kenta Nakai |
HyGAnno: hybrid graph neural network-based cell type annotation for single-cell ATAC sequencing data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Theinmozhi Arulraj, Hanwen Wang, Alberto Ippolito, Shuming Zhang, Elana J. Fertig, Aleksander S. Popel |
Leveraging multi-omics data to empower quantitative systems pharmacology in immuno-oncology. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Priyotosh Sil, Ajay Subbaroyan, Saumitra Kulkarni, Olivier C. Martin, Areejit Samal |
Biologically meaningful regulatory logic enhances the convergence rate in Boolean networks and bushiness of their state transition graph. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Junxi Mu, Zhengxin Li, Bo Zhang, Qi Zhang, Jamshed Iqbal, Abdul Wadood, Ting Wei, Yan Feng, Hai-Feng Chen |
Graphormer supervised de novo protein design method and function validation. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Lingyan Zheng, Shuiyang Shi, Xiuna Sun, Mingkun Lu, Yang Liao, Sisi Zhu, Hongning Zhang, Ziqi Pan, Pan Fang, Zhenyu Zeng, Honglin Li, Zhaorong Li, Weiwei Xue, Feng Zhu 0004 |
MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Chengcheng Zhang, Tianyi Zang, Tianyi Zhao |
KGE-UNIT: toward the unification of molecular interactions prediction based on knowledge graph and multi-task learning on drug discovery. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinyu Guo, Liang Chen |
From G1 to M: a comparative study of methods for identifying cell cycle phases. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Min Sun, Jing Chen, Chang Zhao, Lihua Zhang, Maili Liu, Yukui Zhang, Qun Zhao, Zhou Gong |
Enhancing protein dynamics analysis with hydrophilic polyethylene glycol cross-linkers. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Fabio N. de Mello, Ana C. Tahira, Maria Gabriela Berzoti-Coelho, Sergio Verjovski-Almeida |
The CUT&RUN greenlist: genomic regions of consistent noise are effective normalizing factors for quantitative epigenome mapping. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yi-Heng Zhu, Zi Liu, Yan Liu 0038, Zhiwei Ji, Dong-Jun Yu |
ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein-DNA binding site prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Guoxuan Ma, Jian Kang 0003, Tianwei Yu |
Bayesian functional analysis for untargeted metabolomics data with matching uncertainty and small sample sizes. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Céline Brouard, Raphaël Mourad, Nathalie Vialaneix |
Should we really use graph neural networks for transcriptomic prediction? |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Akram Vasighizaker, Sheena Hora, Raymond Zeng, Luis Rueda 0001 |
SEGCECO: Subgraph Embedding of Gene expression matrix for prediction of CEll-cell COmmunication. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Junxiang Zeng, Xiupan Gao, Limei Gao, Youyou Yu, Lisong Shen, Xiujun Pan |
Recognition of rare antinuclear antibody patterns based on a novel attention-based enhancement framework. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ming-Siang Huang, Jen-Chieh Han, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu |
Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Adjustment of scRNA-seq data to improve cell-type decomposition of spatial transcriptomics. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuang Gu, Chaoliang Wen, Zhen Xiao, Qiang Huang, Zheyi Jiang, Honghong Liu, Jia Gao, Junying Li, Congjiao Sun, Ning Yang |
MyoV: a deep learning-based tool for the automated quantification of muscle fibers. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Mona Nourbakhsh, Kristine Degn, Astrid Saksager, Matteo Tiberti, Elena Papaleo |
Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Albert Katchborian-Neto, Matheus F. Alves, Paula C. P. Bueno, Karen de Jesus Nicácio, Miller S. Ferreira, Tiago B. Oliveira, Henrique Barbosa, Michael Murgu, Ana C. C. de Paula Ladvocat, Danielle F. Dias, Marisi G. Soares, João Henrique Ghilardi Lago, Daniela A Chagas-Paula |
Integrative open workflow for confident annotation and molecular networking of metabolomics MSE/DIA data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Shenjie Wang, Xiaoyan Zhu 0003, Xuwen Wang, Yuqian Liu, Minchao Zhao, Zhili Chang, Xiaonan Wang, Yang Shao, Jiayin Wang |
TMBstable: a variant caller controls performance variation across heterogeneous sequencing samples. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Introducing π-HelixNovo for practical large-scale de novo peptide sequencing. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Hui Wang, Dong Liu, Kailong Zhao, Yajun Wang, Guijun Zhang |
SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhanyu Xu, Haibo Liao, Liuliu Huang, Qingfeng Chen, Wei Lan, Shikang Li |
IBPGNET: lung adenocarcinoma recurrence prediction based on neural network interpretability. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yan Miao, Zhenyuan Sun, Chenjing Ma, Chen Lin, Guohua Wang, Chunxue Yang |
VirGrapher: a graph-based viral identifier for long sequences from metagenomes. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Sheng-Yong Xu, Shanshan Cai, Zhi-Qiang Han |
Evaluating the efficacy of MEANGS for mitochondrial genome assembly of cartilaginous and ray-finned fish species. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Youngjune Park, Nils P. Muttray, Anne-Christin Hauschild |
Species-agnostic transfer learning for cross-species transcriptomics data integration without gene orthology. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhen Tian, Chenguang Han, Lewen Xu, Zhixia Teng, Wei Song |
MGCNSS: miRNA-disease association prediction with multi-layer graph convolution and distance-based negative sample selection strategy. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Lijuan Wang, Ying Lu, Doudou Li, Yajing Zhou, Lili Yu, Ines Mesa Eguiagaray, Harry Campbell, Xue Li, Evropi Theodoratou |
The landscape of the methodology in drug repurposing using human genomic data: a systematic review. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Ken Chen 0006, Yue Zhou, Maolin Ding, Yu Wang, Zhixiang Ren, Yuedong Yang |
Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Jin Zhang, Zikang Ma, Yan Yang, Lei Guo, Lei Du |
Modeling genotype-protein interaction and correlation for Alzheimer's disease: a multi-omics imaging genetics study. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Kongming Li, Jiahao Li, Yuhao Tao, Fei Wang 0017 |
stDiff: a diffusion model for imputing spatial transcriptomics through single-cell transcriptomics. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Yuyao Zhai, Liang Chen, Minghua Deng |
scEVOLVE: cell-type incremental annotation without forgetting for single-cell RNA-seq data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Xinyan Wang, Kuo Yang, Ting Jia, Fanghui Gu, Chongyu Wang, Kuan Xu, Zixin Shu, Jianan Xia, Qiang Zhu, Xuezhong Zhou |
KDGene: knowledge graph completion for disease gene prediction using interactional tensor decomposition. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Aleksandra E. Badaczewska-Dawid, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik |
Structure prediction of linear and cyclic peptides using CABS-flex. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Yury A Barbitoff, Mikhail O. Ushakov, Tatyana E. Lazareva, Yulia A Nasykhova, Andrey S. Glotov, Alexander V. Predeus |
Bioinformatics of germline variant discovery for rare disease diagnostics: current approaches and remaining challenges. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Tinghe Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang |
Understanding YTHDF2-mediated mRNA degradation by m6A-BERT-Deg. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Zeyu Luo, Rui Wang, Yawen Sun, Junhao Liu, Herman Z. Q. Chen, Yu-Juan Zhang |
Interpretable feature extraction and dimensionality reduction in ESM2 for protein localization prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Gulam Sarwar Chuwdhury, Yunshan Guo, Chi-Leung Chiang, Ka-On Lam, Ngar-Woon Kam, Zhonghua Liu, Wei Dai |
ImmuneMirror: A machine learning-based integrative pipeline and web server for neoantigen prediction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Hongyuan Zhao, Suyi Zhang, Hui Qin, Xiaogang Liu, Dongna Ma, Xiao Han, Jian Mao, Shuangping Liu |
DSNetax: a deep learning species annotation method based on a deep-shallow parallel framework. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Yue Zang, Xia Ran, Jie Yuan, Hao Wu, Youya Wang, He Li, Huajing Teng, Zhongsheng Sun |
Genomic hallmarks and therapeutic targets of ribosome biogenesis in cancer. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Huanhuan Liu, Qinwei Chen, Jintao Guo, Ying Zhou, Zhiyu You, Jun Ren, Yuanyuan Zeng, Jing Yang, Jialiang Huang, Qiyuan Li |
Epigenome-augmented eQTL-hotspots reveal genome-wide transcriptional programs in 36 human tissues. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Sowmya Ramaswamy Krishnan, Arijit Roy, M. Michael Gromiha |
Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Olivier Cinquin |
ChIP-GPT: a managed large language model for robust data extraction from biomedical database records. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Wang Yin, You Wan, Yuan Zhou |
SpatialcoGCN: deconvolution and spatial information-aware simulation of spatial transcriptomics data via deep graph co-embedding. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Songqi Zhou, Yang Li, Wenyuan Wu, Li Li |
scMMT: a multi-use deep learning approach for cell annotation, protein prediction and embedding in single-cell RNA-seq data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Yaofeng Hu, Kai Xiao, Hengyu Yang, Xiaoping Liu 0002, Chuanchao Zhang, Qianqian Shi |
Spatially contrastive variational autoencoder for deciphering tissue heterogeneity from spatially resolved transcriptomics. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Tingpeng Yang, Tianze Ling, Boyan Sun, Zhendong Liang, Fan Xu, Xiansong Huang, Linhai Xie, Yonghong He, Leyuan Li, Fuchu He, Yu Wang, Cheng Chang |
Introducing π-HelixNovo for practical large-scale de novo peptide sequencing. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Kandarp Joshi, Dan O. Wang |
epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Yantong Cai, Jia Lv, Rui Li, Xiaowen Huang, Shi Wang, Zhenmin Bao, Qifan Zeng |
Deqformer: high-definition and scalable deep learning probe design method. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Seunghyun Wang, Doheon Lee |
Community cohesion looseness in gene networks reveals individualized drug targets and resistance. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Merve Vural-Ozdeniz, Kubra Calisir, Rana Acar, Aysenur Yavuz, Mustafa M. Ozgur, Ertugrul Dalgic, Ozlen Konu |
CAP-RNAseq: an integrated pipeline for functional annotation and prioritization of co-expression clusters. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Marc-Antoine Gerault, Samuel Granjeaud, Luc Camoin, Pär Nordlund, Lingyun Dai |
IMPRINTS.CETSA and IMPRINTS.CETSA.app: an R package and a Shiny application for the analysis and interpretation of IMPRINTS-CETSA data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Qingyue Wei, Md Tauhidul Islam, Yuyin Zhou, Lei Xing 0001 |
Self-supervised deep learning of gene-gene interactions for improved gene expression recovery. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Jinze Huang, Yang Zhao, Bo Meng, Ao Lu, Yaoguang Wei, Lianhua Dong, Xiang Fang, Dong An, Xinhua Dai |
SEAOP: a statistical ensemble approach for outlier detection in quantitative proteomics data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Minghao Fang, Jingwen Fang, Songwen Luo, Ke Liu, Qiaoni Yu, Jiaxuan Yang, Youyang Zhou, Zongkai Li, Ruoming Sun, Chuang Guo, Kun Qu |
eccDNA-pipe: an integrated pipeline for identification, analysis and visualization of extrachromosomal circular DNA from high-throughput sequencing data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Jiaxuan Liu, Yonggang Lu, Li Zhu |
A kinetic model for solving a combination optimization problem in ab-initio Cryo-EM 3D reconstruction. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Yibo Zhang, Wenyu Liu 0006, Junbo Duan |
On the core segmentation algorithms of copy number variation detection tools. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Shuo Li, Yan Liu 0038, Long-Chen Shen, He Yan, Jiangning Song, Dong-Jun Yu |
GMFGRN: a matrix factorization and graph neural network approach for gene regulatory network inference. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Zhaojia Chen, Noor ul Ain, Qian Zhao, Xingtan Zhang |
From tradition to innovation: conventional and deep learning frameworks in genome annotation. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong |
Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Fengjuan Huang, Xinjie Fan, Ying Wang, Yu Zou, Jiangfang Lian, Chuang Wang, Feng Ding 0002, Yunxiang Sun |
Computational insights into the cross-talk between medin and Aβ: implications for age-related vascular risk factors in Alzheimer's disease. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Haoquan Liu, Yunjie Zhao |
Integrated modeling of protein and RNA. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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| 1 | Jici Jiang, Hongdi Pei, Jiayu Li, Mingxin Li, Quan Zou 0001, Zhibin Lv |
FEOpti-ACVP: identification of novel anti-coronavirus peptide sequences based on feature engineering and optimization. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
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